Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03000 ATGGGTGTGGATTACTATGATGTGTTGAAGGTTAACAGAAATGCTACGGAGGATGATTTGAAGAAATCATACAGAAAGTTGGCCATGAAATGGCACCCTGATAAGAACCCCAACAACAAAAAGGAAGCTGAAGCCAATTTCAAACAGATTTCAGAGGCTTACGAGGTGCTGAGTGACCCTCAGAGAAGGTTGGTTTATGATCAGTATGGAGAGGAGGGGTTGAAAGATAAGCCACCGGACGAACCATCAAATAATGGGTTCAACCCAAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGGCAAACAAATCTAAGAGATTCCCCTCTGATGGAGGTACTACACCCTTTGGTGGATTTAGTGCGAAGGATAATAATTTTCGATCATATAGTACTGGACGAGGGAATGTGCTAAAGAAGCCACTCCCAGTGGAATCCAAACTTCCTTGCTCTTTGGAGGAATTGTACACTGGATCGACTAGGAAAATGAAGATCTCAAGGAAAACCGTGGATGCTAATGGATGGACAGTTCCGGAAACAGAGATATTGACGATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAAATTACGTTTCCTGAGAAAGGGAATCAAGAACCGAATCAACTGCCTGCAGATCTTGTGTTTGTGATCGACGAGAAGCCTCATGATGTGTTCAAGAGAGACGGGAATGACCTTATTGTGAACAAAAGGGTGTCGTTGGCTGAGGCCATTGGAGGAACCACAATAAACCTCACCACGCTTGATGGACGCAGTTTAAGTGTTCAAGTCACTGACATTGTGAGTCCTGGTTACGAGATGAGTATTCCAAAAGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATCTCAAGATCAAATTTGATGTCAGTTTTCCCACAAAGTTGACCCCTGAGCAACGAGCAGGACTCAAGCGAACACTCACAACTTGA 990 0.4404 MGVDYYDVLKVNRNATEDDLKKSYRKLAMKWHPDKNPNNKKEAEANFKQISEAYEVLSDPQRRLVYDQYGEEGLKDKPPDEPSNNGFNPRNAEDIFAEFFGSSPFGFGSSGANKSKRFPSDGGTTPFGGFSAKDNNFRSYSTGRGNVLKKPLPVESKLPCSLEELYTGSTRKMKISRKTVDANGWTVPETEILTIDVKPGWKKGTKITFPEKGNQEPNQLPADLVFVIDEKPHDVFKRDGNDLIVNKRVSLAEAIGGTTINLTTLDGRSLSVQVTDIVSPGYEMSIPKEGMPITKEPGHRGDLKIKFDVSFPTKLTPEQRAGLKRTLTT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03000 329 Gene3D - 153 231 - -
Viun9g03000 329 CDD DnaJ 4 59 IPR001623 -
Viun9g03000 329 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 327 - -
Viun9g03000 329 SUPERFAMILY Chaperone J-domain 3 108 IPR036869 -
Viun9g03000 329 Gene3D - 232 329 - -
Viun9g03000 329 FunFam Dnaj homolog subfamily b member 150 231 - -
Viun9g03000 329 FunFam DNAJ heat shock family protein 232 327 - -
Viun9g03000 329 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Viun9g03000 329 PRINTS DnaJ domain signature 24 39 IPR001623 -
Viun9g03000 329 PRINTS DnaJ domain signature 6 24 IPR001623 -
Viun9g03000 329 PRINTS DnaJ domain signature 62 81 IPR001623 -
Viun9g03000 329 PRINTS DnaJ domain signature 42 62 IPR001623 -
Viun9g03000 329 Pfam DnaJ domain 4 67 IPR001623 -
Viun9g03000 329 SUPERFAMILY HSP40/DnaJ peptide-binding domain 154 234 IPR008971 GO:0006457|GO:0051082
Viun9g03000 329 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Viun9g03000 329 SMART dnaj_3 3 62 IPR001623 -
Viun9g03000 329 SUPERFAMILY HSP40/DnaJ peptide-binding domain 235 321 IPR008971 GO:0006457|GO:0051082
Viun9g03000 329 CDD DnaJ_C 154 315 - -
Viun9g03000 329 Gene3D DnaJ domain 3 136 IPR036869 -
Viun9g03000 329 Pfam DnaJ C terminal domain 154 312 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03000 Viun-Chr9 37872165 37874106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03000 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 1.78e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03000 K09510 - gmx:100796426 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03000 9 37872165 37874106 Viun9g03000 9 37872165 37874106 ECH