Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02994 ATGCACGTGAAAGCGGCACAGTCATCGTTCCGGGATCGGACGCATGAATTCCACAATATCACCGAGAGGTTGAAGAAATCCGGATCAGGGCCCCCTGGGCCCAGCAGTAGCAGTCCTTCCAGATCGGAGGAACAGCTATCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATTGGCTTCGGAATTCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCCAGATTGGCGAAAAGGACTTCTGTTTTTGATGATCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTTCAGTTGCTGTGCAACTCGAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCTACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCACGAGAATAGAAGACAGTTGTTTTCTTCTTCTGGTTCTAAGGATTCAGCTAATCCTTTCATCCGGCAACGGCCCTTGGCTGCTAAGGCGGCAGCTAGTAGTTCTAATGCCCCTGCTCCTCCATGGGCTAATGATTCGCCATCTTCATCTCAGGTGTTTCCCAAGAAGCGAATGGACATGGAGAGTCAACCATTGTTGCAGCAGCAGCAGCAGGAGGGTGTAGTTCCATTACAAGACAGTTACATGCAAAGCCGAACTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACGCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGATGATACATTGTCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1014 0.4625 MHVKAAQSSFRDRTHEFHNITERLKKSGSGPPGPSSSSPSRSEEQLSAIANQSDFNRRASKIGFGIHQTSQKLAKLARLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKVHENRRQLFSSSGSKDSANPFIRQRPLAAKAAASSSNAPAPPWANDSPSSSQVFPKKRMDMESQPLLQQQQQEGVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02994 337 Gene3D - 47 300 - -
Viun9g02994 337 Pfam SNARE domain 281 333 IPR000727 -
Viun9g02994 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun9g02994 337 MobiDBLite consensus disorder prediction 30 46 - -
Viun9g02994 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Viun9g02994 337 MobiDBLite consensus disorder prediction 1 46 - -
Viun9g02994 337 CDD SNARE_syntaxin5 248 326 - -
Viun9g02994 337 SMART tSNARE_6 240 307 IPR000727 -
Viun9g02994 337 SUPERFAMILY t-snare proteins 52 300 IPR010989 GO:0016020|GO:0016192
Viun9g02994 337 PANTHER SYNTAXIN 50 329 IPR045242 -
Viun9g02994 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Viun9g02994 337 MobiDBLite consensus disorder prediction 1 23 - -
Viun9g02994 337 MobiDBLite consensus disorder prediction 192 219 - -
Viun9g02994 337 MobiDBLite consensus disorder prediction 203 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02994 Viun-Chr9 37825196 37828251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02994 1 337 SNARE and Associated Proteins AT3G24350 63.215 1.84e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02994 K08490 - gmx:100811494 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02994 9 37825196 37828251 Viun9g02994 9 37825196 37828251 ECH