Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02981 ATGATTTTATGGACGATAGCTAGCATCATGGGAGTGGTGGCAGTATTGCACACTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGACGTGTATAATCATCTACCATCAAACGAAGAGCGCATACTTGGAGAAGAATCAAGTCAATCAACAGATCACCAAAAGATCAATAATTTGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAGCTGCCGCCATTGTCACAATGAAGCAAAAAATAATATCGACATTGATCAGAAGCACAGACACGATATTCCCCGGCATCAAGTTAAACAGGTCATATGTTCACTTTGTGAGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAGATGTGGTTGTTGCTATCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGCGGACATACAATACATAAGAGCTGCCTGAACGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGGAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCATAAGTGCTTAAACTGCAAATCCTACAACACACGACAAATAAGAGGCTGA 960 0.4229 MILWTIASIMGVVAVLHTESLQLDCKDTKHVTEKDVYNHLPSNEERILGEESSQSTDHQKINNLRERGYMEYGCQHYRRRCRIRAPCCNEIFSCRHCHNEAKNNIDIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCYRCGCCYPTQMKNSHPCVEGAMHHDCPICFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAHKCLNCKSYNTRQIRG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02981 319 CDD RING-H2_Pirh2-like 209 253 - -
Viun9g02981 319 SUPERFAMILY CHY zinc finger-like 71 145 IPR037274 GO:0008270
Viun9g02981 319 Pfam CHY zinc finger 74 155 IPR008913 GO:0008270
Viun9g02981 319 Pfam Ring finger domain 209 252 IPR001841 -
Viun9g02981 319 Pfam Zinc-ribbon 257 315 IPR039512 -
Viun9g02981 319 ProSiteProfiles Zinc finger RING-type profile. 210 253 IPR001841 -
Viun9g02981 319 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 50 318 - -
Viun9g02981 319 SMART ring_2 210 252 IPR001841 -
Viun9g02981 319 ProSiteProfiles Zinc finger CTCHY-type profile. 145 209 IPR017921 -
Viun9g02981 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 267 IPR013083 -
Viun9g02981 319 SUPERFAMILY RING/U-box 209 261 - -
Viun9g02981 319 ProSiteProfiles Zinc finger CHY-type profile. 67 143 IPR008913 GO:0008270
Viun9g02981 319 SUPERFAMILY Zinc hairpin stack 146 203 IPR037275 -
Viun9g02981 319 Gene3D - 281 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02981 Viun-Chr9 37782273 37789143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02981 72 319 C2H2 Transcription Factor Family AT3G18290 39.370 1.15e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02981 K10144 - gmx:100812023 608.216