Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02980 ATGGGAGTGGTGGCAGTATTGCACACTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGACGTGTATAATCATCTACCATCAAACGAAGAGCGCATACTTGGAGAAGAATCAAGTCAATCAACAGATCACCAAAAGATCAATAATTTGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAGCTGCCGCCATTGTCACAATGAAGCAAAAAATAATATCGACATTGATCAGAAGCACAGACACGATATTCCCCGGCATCAAGTTAAACAGGTCATATGTTCACTTTGTGAGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAGATGTGGTTGTTGCTATCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGCGGACATACAATACATAAGAGCTGCCTGAACGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGGAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCATAAGTGCTTAAACTGCAAATCCTACAACACACGACAAATAAGAGGCTGA 933 0.4244 MGVVAVLHTESLQLDCKDTKHVTEKDVYNHLPSNEERILGEESSQSTDHQKINNLRERGYMEYGCQHYRRRCRIRAPCCNEIFSCRHCHNEAKNNIDIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCYRCGCCYPTQMKNSHPCVEGAMHHDCPICFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAHKCLNCKSYNTRQIRG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02980 310 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Viun9g02980 310 Pfam Ring finger domain 200 243 IPR001841 -
Viun9g02980 310 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
Viun9g02980 310 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Viun9g02980 310 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Viun9g02980 310 Gene3D - 272 310 - -
Viun9g02980 310 SMART ring_2 201 243 IPR001841 -
Viun9g02980 310 Pfam Zinc-ribbon 248 306 IPR039512 -
Viun9g02980 310 SUPERFAMILY RING/U-box 200 252 - -
Viun9g02980 310 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Viun9g02980 310 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Viun9g02980 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Viun9g02980 310 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 41 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02980 Viun-Chr9 37782273 37789146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02980 63 310 C2H2 Transcription Factor Family AT3G18290 39.370 1.83e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02980 K10144 - gmx:100812023 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02980 9 37782273 37789146 Viun9g02980 9 37782273 37789146 ECH