Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02976 ATGTCGATGTCGTCTCGAGAGAGAAGATGCTCAAGCAACGAAATGGCCTCTGTTTCAAGTACCATCTTTCCAGCATTTGGCACCCCCATCTTTCATGTAGAACCTTATTCCAACCTAAGAAAATACGTCATTTCTCCCTATGACCGTAGATATCAATTGTGGCAAACGTTGGTAGTGGCTTTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAAAACTGTTAGCTGGGTCATTGTTGACCGTTGTCGATCTCCTTGTTGATGCCTTCTTTGCAGTTGACATAATCCTTACTTTCTTTGTGGCTTACTTCGATACATCAACTTATCTCCTCGTCCATGATCATAACAAGATTGCTCTCAGGTACGTCAAAAAGTTGCACTTCACCATGGATCTAGCCTCCACTCTGCCAATTGAGCAGATATATCAAATTCTGACGGGCAAGCCAAGCAGAAGCGAGTTATTTGGTTTCCTAATTATGCTAAGACTCTGGAGATTGAGGCGTGTTAGCGAACTCTTCGCAAGGCTAGAGAAAGACATACGAATCAATTATTCTGCGACAAGATTTTGCAAACTTATATGTGTTACACTATTTGCAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCGAGCACAAGACACCGAAACACACGTGGTTAGGGAACAAAACACAGGACTTTCATGAATTGGGAGTCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTTCAACCCTTACCAGCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTGCATTTTTTACATGCTCTTTAACATCGGCCTCGGTGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTAAGGGATGTCTTCAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGACTAAAGGAGCAAATATTGGCACACATGCAATTGAAGTTTAAGACTGCAGAGTTGCAGCAAGAACTGTTAGAAGACCTGCCTAAAACTATAAGATCCTGTATTGCTCACCACCTTTTCAGAAACATAGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACCCAGCTGGTGTCAGAAACGAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTGTACATCTTGGTATCTGGGTCACTGGATGTGTTGAAATACAATAATGGGTCAGAACAGTTTTTATTCGAACTTGAGTCTGGAGACATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGGTGCAACCATTTAGTGACGATGGGAAGGCTATCATGTACAACTTTATTCGGCATTTGAACGGCCTCAAAGGCAAGGTGCTAGAAGAAATATCTTATGTAACGGAATTGCTGGGTGACCTTGAGCACTGGTTTTTGCAGCATCTGAAACAAAATGAGGGCACACTCCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAATAGGAAATTTCAAACCACTGAGAAGACCAGTCCCCGTTAGAGTTACAATCCACGGACACCATCCCAATGAAAACAAAATGGGAAATGGAACAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATATTTTCAGAGCTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCACAGAAGTAGAAGAATTAAACGCGATAAGGGAGAATGATGAGTTGTATATTCTCTAA 1875 0.4117 MSMSSRERRCSSNEMASVSSTIFPAFGTPIFHVEPYSNLRKYVISPYDRRYQLWQTLVVALVVYSAWASPFELAFRKLLAGSLLTVVDLLVDAFFAVDIILTFFVAYFDTSTYLLVHDHNKIALRYVKKLHFTMDLASTLPIEQIYQILTGKPSRSELFGFLIMLRLWRLRRVSELFARLEKDIRINYSATRFCKLICVTLFAAHFAGCMFFWLAVEHKTPKHTWLGNKTQDFHELGVGLGYTYSVYWSVSTLTSVGYGDFYAVNLTEMLFCIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVRDVFNKILQYANKNRLPGRLKEQILAHMQLKFKTAELQQELLEDLPKTIRSCIAHHLFRNIVETAYLFKGVSDYFITQLVSETKAEYYPSKVDIILQNEMPKYLYILVSGSLDVLKYNNGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMVQPFSDDGKAIMYNFIRHLNGLKGKVLEEISYVTELLGDLEHWFLQHLKQNEGTLHEVSRYQDPYKEGKIGNFKPLRRPVPVRVTIHGHHPNENKMGNGTTPKLILLPNSIEDIFRAAERKFGKRGSKILMADGTEVEELNAIRENDELYIL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02976 624 ProSiteProfiles KHA domain profile. 555 624 IPR021789 -
Viun9g02976 624 CDD CAP_ED 371 484 IPR000595 -
Viun9g02976 624 FunFam Potassium channel KAT2 359 495 - -
Viun9g02976 624 SUPERFAMILY cAMP-binding domain-like 303 491 IPR018490 -
Viun9g02976 624 Gene3D - 52 296 - -
Viun9g02976 624 Gene3D Jelly Rolls 342 505 IPR014710 -
Viun9g02976 624 SMART cnmp_10 371 488 IPR000595 -
Viun9g02976 624 Pfam Ion transport protein 52 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun9g02976 624 Pfam KHA, dimerisation domain of potassium ion channel 555 623 IPR021789 -
Viun9g02976 624 PANTHER POTASSIUM CHANNEL AKT1 15 504 IPR045319 GO:0005249|GO:0006813
Viun9g02976 624 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02976 624 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02976 624 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02976 624 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02976 624 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02976 624 FunFam Potassium channel KAT3 53 296 - -
Viun9g02976 624 SUPERFAMILY Voltage-gated potassium channels 46 295 - -
Viun9g02976 624 Pfam Cyclic nucleotide-binding domain 392 474 IPR000595 -
Viun9g02976 624 ProSiteProfiles cAMP/cGMP binding motif profile. 371 490 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02976 Viun-Chr9 37760882 37766360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02976 8 623 Ion Channels AT4G32650 54.444 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02976 K21867 - gmx:100794620 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02976 9 37760882 37766360 Viun9g02976 9 37760882 37766360 ECH