Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02941 ATGCCATTGATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAGTCCCTAGAAAGGGGGCGGGCCATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCCTTGAAACCTTCTATTCAATCTTCTTCTGCTGGAAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAACCCCGGAAAAAACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTATTGGATGAGTCAGAGGTTTCAAAAGTCGCCCCTTCCCCTGAAAAAAGTCAGAGAGGTCTTCAAGCTGAAATGGAAAAGACAGTGTCTGGTAGTGTCATGATGGAAGTAGGAAGCTCAAGTGTGGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGAATTAGTGGTCAGGAAATTAAAACCACTGGTCCAGTGATGCGTGCAGGTAGCAGTAGGTATGGATTGAGGAATCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGAGATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGTTCGTCTGCTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCCATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCCAGCCAAGCAAATGCCAATCCCGTGTCACCCAATCACTCCCCTGTCATGGTACCTTCTTTGCCTCATTCTGGTGGTCGTAATGCTTCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGCTCTCACAGTAGACCAGGTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGGCTCTCCTTCAGAATATGGGCTCACTCATTCTATAATGAATCTGGATAGCTTTCGACGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCGCATAGAGACATGCGATTGGACATCGATAACATGTCATATGAGCAACTTCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTGTCAGAATGTCTAAAGAAAAGTTTCTTCCAGTCTTCACCCTCTGGAAATGCAGTCAACAGTTGCAAGGAAGCCAAGGATGACACCAAATGCAGCATCTGCCAGGAGGAATATGTGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAATGGCTTCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCTGTGGTACCTTCAAATTCATCCCCATCTCAATGA 1641 0.4485 MPLMDEYSGKRAIDGMVVPRKGAGHVFRDTANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKPSSQLETDSSETSSVLDESEVSKVAPSPEKSQRGLQAEMEKTVSGSVMMEVGSSSVVSNSRSRRNFHPKSGISGQEIKTTGPVMRAGSSRYGLRNLKCNSISDVLPAGCSPSDSTLNRRKEMIKKRNCEGEGSSSARGKKMSGSSLEGRNSGSRNGISISDSRISRNTPPHRDRSDSNMAPVRTRKSISGHARGRLSSQANANPVSPNHSPVMVPSLPHSGGRNASGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSGNAVNSCKEAKDDTKCSICQEEYVVADELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVVPSNSSPSQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02941 546 SUPERFAMILY RING/U-box 486 540 - -
Viun9g02941 546 SMART ring_2 493 533 IPR001841 -
Viun9g02941 546 MobiDBLite consensus disorder prediction 159 181 - -
Viun9g02941 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 77 537 IPR045191 GO:0061630
Viun9g02941 546 MobiDBLite consensus disorder prediction 241 269 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 270 284 - -
Viun9g02941 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 545 IPR013083 -
Viun9g02941 546 ProSiteProfiles Zinc finger RING-type profile. 493 534 IPR001841 -
Viun9g02941 546 FunFam E3 ubiquitin-protein ligase arkadia 455 539 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 48 147 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 110 124 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 326 353 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 227 361 - -
Viun9g02941 546 Coils Coil 397 417 - -
Viun9g02941 546 MobiDBLite consensus disorder prediction 48 92 - -
Viun9g02941 546 Pfam Ring finger domain 492 534 IPR001841 -
Viun9g02941 546 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02941 Viun-Chr9 37517572 37522154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02941 379 538 C3H Transcription Factor Family AT2G15530 42.236 1.68e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02941 - - gmx:100787213 889.412