Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02932 ATGAGTATTGGTGACAAGAACAGAATGAGCATCAAAATTCCCTCGCTTGCAAAGTTCAAGGTTTTCCCAGAAAACCATGAGCCATGGAAGAAGAAAATTCTTGATCCAGGGAGTGATGTAATTTTGGAGTGGAACCGGGCATTCCTGTTTTCCTGCATTCTGGCACTGTTTGTTGATCCACTATTTTTCTACCTTCCCTCAGTGGCAAATGATGGGAAATCTTCGTGTATGGCTACTGATTTGAATATAGGAATTGTTGTGACATGTTTCCGAACATTTGCTGATGTTTTCTATCTGCTCAACATGGCCATCAAGTTCAGAACAGCCTATGTATCACCGAGTTCTAGGGTGTTTGGAAGGGGTGAGCTTGTTATGGATCCTAGGCTTATTGCAAGGCGATATTTGAGATCAGAGTTCTTCCTAGATCTGGTTGCTACACTACCTCTTCCCCAGATTGTGATTTGGTTTATCATGCCAGCAATCAGAAGCTCCCATGCTGATCACACCAACAATGCACTTGTACTCATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATTTTCCCATTGAGTTCTCAGATTATTAAAGCCACTGGTGTAGTTACAAAGACAGCATGGGCTGGGGCTGCTTACAATCTTTTACTTTACATGCTTGCTAGTCATGTGTTGGGGGCATCATGGTATCTGTTATCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGCTCTTAAGTACTTAGATTGCAGTACTTTAAACCAGGATGATCGCATGAAGTGGGTAAACAGTACTTCTGTGTTTGGTAACTGCAATCCTGAAAATACCACCAATTTCAACTATGGAATTTTTGCAAGTGCAGTGGAAAATAATGTTATCTCCTCCGTGTTTATAGAGAAGTATCTCTATTGTCTCTGGTGGGGCTTGCAGAACTTAAGCTCCTATGGCCAGGGTTTGACCACAAGCACATTCATTGGGGAAACTGCATTTGCAATACTCATGGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCACCGTCAGCTCCCACAAAATCTGAGAGAGCGTGTCCGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTCCCTATTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCACAAATGGATGCTCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACGTACATAGTCAGAGAAGGAGATCCGGTTACAGAGATGCTCTTTATCATCAGAGGAAGACTTGAAAGTTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCGTTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAAAGCCCTTGTAGAAGTTGAAGCATTTGCACTAAGAGCGGAAGATCTTAAATTCGTGGCCAATCAGTTCAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTTGCGAAGAGCCTTAGCTTGAGGGAATGCGAGTCCTTCAATCACGATCAACATAATGAAGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAACAAAACCTAGGTGTCACTATTCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGAGTTCAGAAGATGAAGGATGTAGAGCTGCCCAAGTTGCAAAAGCCTGAAGAACCAGACTTTTCAGTAGAGCCTGATGATGATTAG 2031 0.4357 MSIGDKNRMSIKIPSLAKFKVFPENHEPWKKKILDPGSDVILEWNRAFLFSCILALFVDPLFFYLPSVANDGKSSCMATDLNIGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCALKYLDCSTLNQDDRMKWVNSTSVFGNCNPENTTNFNYGIFASAVENNVISSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFIGETAFAILMAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDAQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRECESFNHDQHNEEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKMKDVELPKLQKPEEPDFSVEPDDD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02932 676 Gene3D Jelly Rolls 440 560 IPR014710 -
Viun9g02932 676 FunFam Cyclic nucleotide-gated ion channel 1 369 433 - -
Viun9g02932 676 SMART cnmp_10 442 573 IPR000595 -
Viun9g02932 676 Pfam Cyclic nucleotide-binding domain 465 553 IPR000595 -
Viun9g02932 676 MobiDBLite consensus disorder prediction 653 668 - -
Viun9g02932 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 669 - -
Viun9g02932 676 FunFam Cyclic nucleotide-gated ion channel 1 440 558 - -
Viun9g02932 676 Gene3D - 61 368 - -
Viun9g02932 676 Pfam Ion transport protein 44 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun9g02932 676 SUPERFAMILY cAMP-binding domain-like 372 564 IPR018490 -
Viun9g02932 676 MobiDBLite consensus disorder prediction 653 676 - -
Viun9g02932 676 SUPERFAMILY Voltage-gated potassium channels 38 364 - -
Viun9g02932 676 PRINTS EAG/ELK/ERG potassium channel family signature 355 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02932 676 PRINTS EAG/ELK/ERG potassium channel family signature 102 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02932 676 PRINTS EAG/ELK/ERG potassium channel family signature 311 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02932 676 PRINTS EAG/ELK/ERG potassium channel family signature 405 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02932 676 PRINTS EAG/ELK/ERG potassium channel family signature 337 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun9g02932 676 CDD CAP_ED 442 573 IPR000595 -
Viun9g02932 676 Gene3D Helix hairpin bin 370 433 - -
Viun9g02932 676 ProSiteProfiles cAMP/cGMP binding motif profile. 442 525 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02932 Viun-Chr9 37435618 37439566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02932 6 672 Ion Channels AT2G24610 73.285 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02932 K05391 - gmx:100803334 1294.64