Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02905 ATGCAAGTAAGTAACTGCTTAACTTATTCATCTAACACTTCCTCATTTTCAACTATTTCTCTACCTCAACCTGAGGAACAAAGTCTTTGTGATTTATTTATCCAAAGGAAGGAAAAGGAAGCCATTATGAAGGAGGGAACGGATATAGAAATGGAAGGAACACATGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACCGATGAAGAACTTGTCACTTGCTATCTCCTAAATAAGATTTCAGATTCTAATTTCACAGGCAGAGCAATAACTGATGTAGATCTCAACAAAAGTGAGCCATGGGAGCTTCCAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACTGGTGTGAGAACCAATCGAGCAACGAACACAGGGTATTGGAAGACAACAGGGAAAGACAAAGAGATCCTCAACAGTGGAACATCGGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTTCAGAACTACCAGGCAGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGGGCAAAAAAGTTCCCTTCTTCCAACCATGGAAGAGCAGTGAATCCTTACAGTTTAGAAATAGGGCAAAATATTATGCAGGCACCAGTGATGCAAATGGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAGTGTTGAGTTAGGTGAACTTGCTAGGGTTTTAAGAGGGGGTGGATCAACAAGTAGTGTCAACCAACCAATGCAATCCCAATTAGGGTACCCTACATCAGCAGGATTCACCATTTCAGGACTAAATTTGAATCTAGGAGGAGCAACAACCACAACACAACCCGTTTTTCGACCGATGCAAGCTTCTTCTGCTCCTCCTGTCCATACAATGGGTCAAGTTCTTGATGTGAATTCCAGCATGATGACAACGGGTTCTCTTGGTGCAGATGTAGGTTATGGATCAGAAATGAGTAACATGAATTCTCAAGGGAATAGGTTCATGGGCATGGAGCATTGCATGGATCTTGACAACTATTGGCCTTCCTACTAA 1149 0.4247 MQVSNCLTYSSNTSSFSTISLPQPEEQSLCDLFIQRKEKEAIMKEGTDIEMEGTHAKEETLPPGFRFHPTDEELVTCYLLNKISDSNFTGRAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRQDEWVVCRVFKKSGGAKKFPSSNHGRAVNPYSLEIGQNIMQAPVMQMGDPAAHFLYGRNYMNSVELGELARVLRGGGSTSSVNQPMQSQLGYPTSAGFTISGLNLNLGGATTTTQPVFRPMQASSAPPVHTMGQVLDVNSSMMTTGSLGADVGYGSEMSNMNSQGNRFMGMEHCMDLDNYWPSY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02905 382 SUPERFAMILY NAC domain 54 210 IPR036093 GO:0003677|GO:0006355
Viun9g02905 382 Pfam No apical meristem (NAM) protein 62 188 IPR003441 GO:0003677|GO:0006355
Viun9g02905 382 ProSiteProfiles NAC domain profile. 61 210 IPR003441 GO:0003677|GO:0006355
Viun9g02905 382 FunFam NAC domain-containing protein 100-like 70 214 - -
Viun9g02905 382 Gene3D NAC domain 70 213 IPR036093 GO:0003677|GO:0006355
Viun9g02905 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 58 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02905 Viun-Chr9 37290270 37292661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02905 57 382 NAC Transcription Factor Family AT2G24430 54.545 4.98e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun9g02905 NAM 5.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02905 - - gmx:100804931 597.43