Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02904 ATGCAAGTAAGTAACTGCTTAACTTATTCATCTAACACTTCCTCATTTTCAACTATTTCTCTACCTCAACCTGAGGAACAAAGTCTTTGTGATTTATTTATCCAAAGGAAGGAAAAGGAAGCCATTATGAAGGAGGGAACGGATATAGAAATGGAAGGAACACATGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACCGATGAAGAACTTGTCACTTGCTATCTCCTAAATAAGATTTCAGATTCTAATTTCACAGGCAGAGCAATAACTGATGTAGATCTCAACAAAAGTGAGCCATGGGAGCTTCCAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACTGGTGTGAGAACCAATCGAGCAACGAACACAGGGTATTGGAAGACAACAGGGAAAGACAAAGAGATCCTCAACAGTGGAACATCGGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCTAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTTCAGAACTACCAGGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGGGCAAAAAAGTTCCCTTCTTCCAACCATGGAAGAGCAGTGAATCCTTACAGTTTAGAAATAGGGCAAAATATTATGCAGGCACCAGTGATGCAAATGGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAGTGTTGAGTTAGGTGAACTTGCTAGGGTTTTAAGAGGGGGTGGATCAACAAGTAGTGTCAACCAACCAATGCAATCCCAATTAGGGTACCCTACATCAGCAGGATTCACCATTTCAGGACTAAATTTGAATCTAGGAGGAGCAACAACCACAACACAACCCGTTTTTCGACCGATGCAAGCTTCTTCTGCTCCTCCTGTCCATACAATGGGTCAAGTTCTTGATGTGAATTCCAGCATGATGACAACGGGTTCTCTTGGTGCAGATGTAGGTTATGGATCAGAAATGAGTAACATGAATTCTCAAGGGAATAGGTTCATGGGCATGGAGCATTGCATGGATCTTGACAACTATTGGCCTTCCTACTAA 1146 0.4241 MQVSNCLTYSSNTSSFSTISLPQPEEQSLCDLFIQRKEKEAIMKEGTDIEMEGTHAKEETLPPGFRFHPTDEELVTCYLLNKISDSNFTGRAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRDEWVVCRVFKKSGGAKKFPSSNHGRAVNPYSLEIGQNIMQAPVMQMGDPAAHFLYGRNYMNSVELGELARVLRGGGSTSSVNQPMQSQLGYPTSAGFTISGLNLNLGGATTTTQPVFRPMQASSAPPVHTMGQVLDVNSSMMTTGSLGADVGYGSEMSNMNSQGNRFMGMEHCMDLDNYWPSY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02904 381 Gene3D NAC domain 70 212 IPR036093 GO:0003677|GO:0006355
Viun9g02904 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 58 275 - -
Viun9g02904 381 Pfam No apical meristem (NAM) protein 62 188 IPR003441 GO:0003677|GO:0006355
Viun9g02904 381 SUPERFAMILY NAC domain 54 209 IPR036093 GO:0003677|GO:0006355
Viun9g02904 381 ProSiteProfiles NAC domain profile. 61 209 IPR003441 GO:0003677|GO:0006355
Viun9g02904 381 FunFam NAC domain-containing protein 100-like 70 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02904 Viun-Chr9 37290267 37292661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02904 57 381 NAC Transcription Factor Family AT2G24430 54.252 2.75e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun9g02904 NAM 5.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02904 - - gmx:100805060 594.734