Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02897 ATGGAACGTACGCGGAAACGCCCTCGTCTCGCATGGGACGTAGCCCCTCCCACAGTGCCAGAGCCTCAACTGGCTCTGCCGGTGCCTGGTGACGAAGGAATTGAAAGAAAGCACGCTTCACCTCCAAGAAGGGACGACGATCGCGAAGGACATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGCACATTTGGTCGGGTATTGGAATGTTGGGACCGCCAAACTAGAGAATATGTGGCTGTCAAGGTAGTTAGAAGCATACGGAAATATCGAGAAGCAGCCATGCTCGAGGTTGATGTGCTTCAACATCTAGCGAAGAACGATAGAGGAAACTCACGATGTGTACAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAGTCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGATCTGAAGCCAGAAAATATTCTTCTGGTTTCTTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAGTTTCCTCAGATGAAACGCAGTTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGGTGGTCATATCCATGTGACCTGTGGAGTGTTGGATGTATTCTTATCGAACTATGCACGGGTGAGGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTATTCCAGAGCACATGATTCGAAGGTCCAATAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCAAGACTAAGATGGCCTGAAGGAGCTATTTCTAGGGAGAGCATCAATGCAGTAAAGAAGCTCGGTCATCTGAAGGATATTGTATCTCGAAGTGTGGACTCTTCAAGGTCCTCCTTAACTGACTTGTTACATGGCTTATTATCATATGACCCAACCAAACGGCTAACAGCTCTTCAAGCTCTCGATCATCCCTTCTTTAGGAATCCAACCTGA 1182 0.4484 MERTRKRPRLAWDVAPPTVPEPQLALPVPGDEGIERKHASPPRRDDDREGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTREYVAVKVVRSIRKYREAAMLEVDVLQHLAKNDRGNSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRVSSDETQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPIPEHMIRRSNKGAEKYFKRGSRLRWPEGAISRESINAVKKLGHLKDIVSRSVDSSRSSLTDLLHGLLSYDPTKRLTALQALDHPFFRNPT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02897 393 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 35 391 - -
Viun9g02897 393 Gene3D Phosphorylase Kinase; domain 1 51 144 - -
Viun9g02897 393 FunFam Serine/threonine-protein kinase AFC2 51 144 - -
Viun9g02897 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Viun9g02897 393 SUPERFAMILY Protein kinase-like (PK-like) 51 391 IPR011009 -
Viun9g02897 393 SMART serkin_6 64 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02897 393 FunFam Serine/threonine-protein kinase AFC2 140 389 - -
Viun9g02897 393 MobiDBLite consensus disorder prediction 31 50 - -
Viun9g02897 393 Pfam Protein kinase domain 64 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02897 393 CDD PKc_CLK 51 389 - -
Viun9g02897 393 Gene3D Transferase(Phosphotransferase) domain 1 118 389 - -
Viun9g02897 393 ProSiteProfiles Protein kinase domain profile. 64 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02897 393 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02897 Viun-Chr9 37270747 37274631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02897 64 391 Core Cell Cycle Gene Families AT1G76540 25.588 3.58e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Viun9g02897 Pkinase 4.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02897 K08287 - gmx:100782453 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02897 9 37270747 37274631 Viun9g02897 9 37270747 37274631 ECH