Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02868 ATGTTTGCAGTTACACCGTATTCTCCGGCGACTATGCCGGTTGACGTCATTCCTCCGCCGTTCCCGCAACCAGCAGCACCCGCATTCCAATCCTCGCCGTCACCATCGATGTTTCTGACGCCTCCAGCCCCAACCTCGCCGTCGCCGGAAACATTACTCGTCCAAGGTCTGCCGCCACCGCCATCTTCAGTTACACCTATTCCTCTGACGGTGCCGGTGTTGCCGTCTCCGTCGCCGGAATCTTTCACACCGCCATTTCCACCATTCGCAGTTTCGCAATCGCCTCCGGCTCCGATCACCGCATCCCAGCCACTTCCGTTTCCATATGCCACAGCGCCTTCAACGACGTCGTTTCCGCCATTTGCAGTCGCACCATCACCTCCGTCTCCGACAGCCGATTTTCCACCTGCATTGCCAGATATGCCTCTGACACCCGAGGCGGCGGCGGTGACGACATCGAGTTTTCCTCCACCGCCTTTACCTCCTTCGTTCACGAGGGAACCAACCTTGGCAACGCCGTGGAGCCCCGCCTTGCCGTTATCGGCGCCGCAAGAAGTGAATTTGCCGGTGGCTGTGAATTTTCAGAAGACCTCAACATTCCACGTGGCAAGTGGGCTCATTGTTGGGCTAGTAATTGGGGCAATCGTTTTGGTGTTTGGTTTTAGCATTGGATTACTTCTATGCAGGAATAGGAAGAAAAACAAACAGAAGAATCTATGCACGGGTCGCACTAAGGAATCACCACCCTCCATTGAATCCAAGGGATCTCATGTTATTCGAGTGCCATCAAATCCAACGCTGCCACCGAATCTCACATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCAGGTATGATGAAATATTAGCGGCCACTAATTGTTTCTCTGAGTCCAATCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTTCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATTAGGTAGCCAACAAGGAGAGAGAGAATTCCAAGCTGAGGTTGAGACAATTAGCCGAGTGCATCATAAGCATCTTGTTGAATTGGTTGGCTACTGCGTTGCTGGGGCAGAGAGAATGCTTGTTTATGAGTTTGTTCCAAATAACACATTGGAATTTCACTTGCATGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCGTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGATTGTAATCCAGCAATTATTCACCGTGATATTAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCGAAAGTCTTGCCAAACAACGATAGTCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGACGTATATTCCTACGGCGTAATGCTTTTAGAACTTATAACCGGACGTCCACCGATCACTGCAGCAGGATCCAGGAATGAGAGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTCCAAGAAGATAGTTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAATTACGAAGCTGATGAGATGGTTAGAATGATTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAGGCTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTAGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACGCAACTGGTCAAATTATTTAGATTATGGTGACAACCAATACCAGTATGAGTTAAGAAGTTTCAATTTGGCACTACCAGCTCAGAAATACAGCTCTAGTGGGTACAGTGAAACCACTAGTGCTTGTGGCCTTTACTCATCAGGCTCAAGTAGTGAGGCTCACGGATCATTCCGAGAAATATTGTAA 2007 0.4793 MFAVTPYSPATMPVDVIPPPFPQPAAPAFQSSPSPSMFLTPPAPTSPSPETLLVQGLPPPPSSVTPIPLTVPVLPSPSPESFTPPFPPFAVSQSPPAPITASQPLPFPYATAPSTTSFPPFAVAPSPPSPTADFPPALPDMPLTPEAAAVTTSSFPPPPLPPSFTREPTLATPWSPALPLSAPQEVNLPVAVNFQKTSTFHVASGLIVGLVIGAIVLVFGFSIGLLLCRNRKKNKQKNLCTGRTKESPPSIESKGSHVIRVPSNPTLPPNLTSGSFKSVSVKTIPNHAPRAAFSPGNGSFRYDEILAATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKLGSQQGEREFQAEVETISRVHHKHLVELVGYCVAGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIAVGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPKVSDFGLAKVLPNNDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNESLVDWARPLLARALQEDSFDNLVDPRLQKNYEADEMVRMITCAAACVRHSSRLRPRMSQIVGALEGVVSLTDLVGDVTPENTPERNWSNYLDYGDNQYQYELRSFNLALPAQKYSSSGYSETTSACGLYSSGSSSEAHGSFREIL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02868 668 MobiDBLite consensus disorder prediction 37 63 - -
Viun9g02868 668 MobiDBLite consensus disorder prediction 23 63 - -
Viun9g02868 668 CDD STKc_IRAK 318 589 - -
Viun9g02868 668 ProSiteProfiles Protein kinase domain profile. 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02868 668 SMART serkin_6 312 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02868 668 Gene3D Phosphorylase Kinase; domain 1 275 387 - -
Viun9g02868 668 SUPERFAMILY Protein kinase-like (PK-like) 290 587 IPR011009 -
Viun9g02868 668 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Viun9g02868 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Viun9g02868 668 MobiDBLite consensus disorder prediction 241 264 - -
Viun9g02868 668 FunFam Proline-rich receptor-like protein kinase PERK8 285 387 - -
Viun9g02868 668 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 221 617 IPR047117 -
Viun9g02868 668 Pfam Protein kinase domain 313 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02868 668 Gene3D Transferase(Phosphotransferase) domain 1 388 597 - -
Viun9g02868 668 MobiDBLite consensus disorder prediction 239 264 - -
Viun9g02868 668 FunFam proline-rich receptor-like protein kinase PERK8 388 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02868 Viun-Chr9 37080686 37084510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02868 256 659 Trihelix Transcription Factor Family AT4G32710 57.985 3.57e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun9g02868 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02868 - - vum:124823967 1019.99