Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02839 ATGGAACCGAGCGAAACGACGTCGGATTCAGTTCCGCGGAAATTGGCCAGGCAATTGGATTTCACCGTCGTTTACGGAGATCCTCCGCACCTGAAACTGCCTCCTCCGTCACCACCGCCGCATTCGCTTCTGGAGCTCTCATCGCATTCTCCGTTGCAGTTGCAGTTAAATTTGCAGACACCGGGGCAACGGCCGTGGTTATGTTCGGAGCAGCAGGAGCAACAGCCCTGGCTACACTCACCGCGACCGAAGCTAGTTTCACCGGTTCGTCGATTTCCGCAGCCGGTGCAGAAACTTCCGGTTAAGGTGTTGCCAGTGGTGAAGTCAGAGTCTCCTATATCACAACCTCGATTTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTATTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGGAACCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACAACGAAATTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTCAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCATAGAGAGTATAATGTAGTTCACATCAATCAGGGAACTAATGCTGCTGTAACCGAAGTCGTTGGATCATCTGGCTATAGAAACCATATAACACCCAAGAGGAGAAAAATTCAGGAAATGTTTTCCGGAAAGTCAGCTGCGGATCAAACTGTTAACACGACTGCCCAATACCTACAGGAAACTGATCTTATGGCTTCGTCGTTTTCAACTCTGTCATATTCCTTTGTTTCTGACCAAGTCAACACAAGAATTTCAGGGTCTTCAAGGTCTATGTACCGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTATTCTCTCAAGAGTATCTGCAAAGACTAAAGCAGAAGCGAGAGGGAAAATAGATCGACAAACAAAAGCTGGGAACTTTAAAGCTTCCGTTGCTTCATCAGCTAAATCGCTACAAAAAACTAAGGATGTTCGCCAACCGGTCTGTGATGATCACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGCCAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGACAATATGTTTTTTGGAAATACTTCTGCCGATGGAGCTTCATATCAAAACTTTCAAAAGTCATTAAATTCTGATGGAAGCTCGGATGCTTACGGAGAGCAGGAAAGGCTTATAATGACCAAACTCTTGGATGTTCTTCGCGAACTCGTTACTCTTGGTAGCATGAAAGAAACGTGCTATTATTCATCGACCAAGAAAGGTGAGAAAAGCAAGAAAGAACCTGCAGACCATGGCAATATTGGGGCCGAAACTGGCGTTGGTAGTGAAAAGAGAAATAATACCAGTTGCATTGCAAATTACCCCATCTCATCTGTTACTAAAATATCCCAAACATTTATGCCATAA 1704 0.4343 MEPSETTSDSVPRKLARQLDFTVVYGDPPHLKLPPPSPPPHSLLELSSHSPLQLQLNLQTPGQRPWLCSEQQEQQPWLHSPRPKLVSPVRRFPQPVQKLPVKVLPVVKSESPISQPRFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEQRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYNVVHINQGTNAAVTEVVGSSGYRNHITPKRRKIQEMFSGKSAADQTVNTTAQYLQETDLMASSFSTLSYSFVSDQVNTRISGSSRSMYRSVLADVLQPQNVKNLCSLFVILSRVSAKTKAEARGKIDRQTKAGNFKASVASSAKSLQKTKDVRQPVCDDHVNKAVADAVDIANYNRPLSPETLALMCDEQDNMFFGNTSADGASYQNFQKSLNSDGSSDAYGEQERLIMTKLLDVLRELVTLGSMKETCYYSSTKKGEKSKKEPADHGNIGAETGVGSEKRNNTSCIANYPISSVTKISQTFMP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02839 567 ProSiteProfiles CRC domain profile. 129 251 IPR005172 -
Viun9g02839 567 PANTHER TESMIN/TSO1-RELATED 25 500 IPR028307 -
Viun9g02839 567 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 214 248 IPR005172 -
Viun9g02839 567 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 130 165 IPR005172 -
Viun9g02839 567 MobiDBLite consensus disorder prediction 516 531 - -
Viun9g02839 567 MobiDBLite consensus disorder prediction 516 540 - -
Viun9g02839 567 SMART CXC_2 128 168 IPR033467 -
Viun9g02839 567 SMART CXC_2 211 252 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02839 Viun-Chr9 36950443 36955414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02839 110 511 CPP Transcription Factor Family AT4G29000 49.881 5.95e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Viun9g02839 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02839 - K21776 gmx:100811459 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02839 9 36950443 36955414 Viun9g02839 9 36950443 36955414 ECH