Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02821 ATGGCGAAAATCGCTCTTGGAAGCAGCAGAGAGGCCACTCAGCCAGATTGCATTCAAGCCCTCGTCGTTGAATTCATCGCCACCTTCCTCTTCGTCTTTGTTGGCGTTGCTTCTTCCATGCTCACTGAGAAGCTTGGTGGGGATGCACTAGTGGGATTGTTTGTTGTGGCCGTGGCACATGCACTGGTGGTGGCCGTCATGATCTCCGCCGCACACATCTCCGGTGGCCACCTGAACCCCGCCGTGACTATCGGTCTCCTCGCCGGTGGCCACATCACCGTGTTCCGTTCCATCCTGTATTGGATTGATCAGTTAGTGGCATCTGCAGCAGCTTCTTATCTCCTTTACTTCCTCTCCGGTTCTCAGAAAACTCCGGTTCATACGCTGGCCGCCGGAGTTGGGTACGGTCAAGGGGTAATTTGGGAGATTGTGTTGACCTTTTCTTTGCTGTTCACTGTCTACGCCACCATGGTAGATCCAAAGAAGGGACCACTTGCTGGGCTTGGCCCCACTCTAGTTGGGTTTGTGGTGGGGGCCAACATCCTCGCTGGTGGGGCTTACTCCGCCGCTTCCATGAACCCAGCACGGTCTTTTGGGCCTGCCTTGGTTACAGGCGACTGGACCGATCATTGGGTTTACTGGGTTGGGCCTCTCGTTGGTGGTGGGCTTGCCGGTTTCATCTATGAAACTTTCTTCATTGATCGATCTCACGCTCCTCTTCCTCGTGATGAAGAATTCTAA 741 0.5425 MAKIALGSSREATQPDCIQALVVEFIATFLFVFVGVASSMLTEKLGGDALVGLFVVAVAHALVVAVMISAAHISGGHLNPAVTIGLLAGGHITVFRSILYWIDQLVASAAASYLLYFLSGSQKTPVHTLAAGVGYGQGVIWEIVLTFSLLFTVYATMVDPKKGPLAGLGPTLVGFVVGANILAGGAYSAASMNPARSFGPALVTGDWTDHWVYWVGPLVGGGLAGFIYETFFIDRSHAPLPRDEEF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02821 246 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Viun9g02821 246 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Viun9g02821 246 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g02821 246 FunFam Probable aquaporin TIP1-1 2 244 - -
Viun9g02821 246 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Viun9g02821 246 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02821 Viun-Chr9 36822396 36823571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02821 1 245 Major Intrinsic Protein MIP AT2G25810 74.694 3.55e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02821 K09873 - gmx:100793258 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02821 9 36822396 36823571 Viun9g02821 9 36822396 36823571 ECH