Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02819 ATGTCTAACGCCCTCAACTTCAACCCCTTTAAGAAGCATTTGCTAGTAATGTTCACCATGGTTCTCTCTATCCCCTTCAGTGTTCAATCTCAAGACAGGGAAGAGGAAGAACAGAACCTGCCACAACAACCTCAAACCGTTCAGCCAAGCAAGGGGATTGTGATAGCAGTGCTCTCCACCATGTTTGCCATTACAACTATCTTACTTTTATATGTGAAGTTCTGTCGAGTCAACAACCGTCATCAACTTCTTACCCCAAACTCAAATCTCCAAAACTTTCAGGGCCGATCTCGATCAAGTTCAAGACTTTCTGGTATCGACAGAGAAGTAGTTAAAACCCTCCCTTTCTTCACGTTTTCATCCCTGAAAGGATTCAAAGATGGCCTAGAATGCACTGTTTGTCTCTCCAGATTCGAGGACGCAGAGACTCTAAGACTGCTTCCGAAGTGCATGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACGTGTCCTCTCTGTAGACGCAGGGTTGAGGCAGGGGACATCAAGAACCTCAACTACTCCCTAAGCTCAAGGTTCCTCCGGGTTCCATCAAATCTCACGGAGGATCTGAACCTTGAAATCTTCGTTCAGAGAGAGGCATCTCATCGAGGGTCATCGACAAGAGGCTTCAAGGACGCTGGGAAGTGCAAGAAACAAGAACTGCTTCTTGGTGATGGTAGTGGCACAAAGTGGGACAAACATGTTCGTGTGACAAACCTTAAAATAGTTATCTCTGACGTTTTCACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACCTGTTGTCGTTGAACAGCGAGATGCTTAATGATGTCAGCAGCAGGAGATTCTGTTCCAGTTCTTTGGAATCTACAGCAGACAGTGGGAAGGTTCAGGGAAGTTGGCGTTGTAAGGAGGAAGAAAAGTGGTTTACGGAAGTGAATCCTGGTGAGAAGAGGTGCATGTCTGAGATTGCGAATGTTCCGAGGTTTGCAGAAATGGGGAAGGAGAATAGGATCGGAGAAAGTGTGAGATCAAATGAGAGATTGGGGAGAGTTTGGCTGCCGATTGCACGAAGAACTATCCAATGGATTGCAAAACAAGAAAGGAATCCGAGTGAATTAGAACCAAAAACTCTAGCCTCAAATGTTTGA 1173 0.4578 MSNALNFNPFKKHLLVMFTMVLSIPFSVQSQDREEEEQNLPQQPQTVQPSKGIVIAVLSTMFAITTILLLYVKFCRVNNRHQLLTPNSNLQNFQGRSRSSSRLSGIDREVVKTLPFFTFSSLKGFKDGLECTVCLSRFEDAETLRLLPKCMHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSRFLRVPSNLTEDLNLEIFVQREASHRGSSTRGFKDAGKCKKQELLLGDGSGTKWDKHVRVTNLKIVISDVFTRSRWSDLNSSDLLSLNSEMLNDVSSRRFCSSSLESTADSGKVQGSWRCKEEEKWFTEVNPGEKRCMSEIANVPRFAEMGKENRIGESVRSNERLGRVWLPIARRTIQWIAKQERNPSELEPKTLASNV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02819 390 CDD RING-H2_EL5-like 130 173 - -
Viun9g02819 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 181 IPR013083 -
Viun9g02819 390 Pfam Ring finger domain 130 173 IPR001841 -
Viun9g02819 390 SMART ring_2 131 172 IPR001841 -
Viun9g02819 390 SUPERFAMILY RING/U-box 110 177 - -
Viun9g02819 390 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Viun9g02819 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 376 - -
Viun9g02819 390 FunFam RING-H2 finger protein ATL43 106 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02819 Viun-Chr9 36802264 36803871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02819 39 377 C3H Transcription Factor Family AT2G20030 39.944 9.82e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02819 K10664 - gmx:100816668 506.908