Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02797 ATGGAAGCACAAGAGTTCTTCCAGAACTCCTTCTACCCTCAATTCCCCTCCGACAACATAACTGCCTCCAACACCAACGCCTCCACCACCGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCCAACAGCGACGAGGCCCCCCTTGTCGACGCCACCTTTGACTCTCTCCCCACTGACCACTCTTCCGCCGTAACCAACCTCGACAGCACCACCAACAACTCCAATTTCTCAGCCGCCGACGGTCATTTCTCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCTGAATTGGAATGGCTGTCGAAATTCGCGGAGGAGTCGTTTTCCAGTGAGGATTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGACACCGCATCGGAAACACGAGAGCCGAACCCGGGTGTGTTCAACCCGCAAGTATCAGTTCGGGGCAAGGCGAGGAGTAAGCGGAGTCGTGGGCCCCCATGCAATTGGTCCTCTCGACTGGTCGTCCTCTCTCCGAACAACACCATGTCTTCGGAGTCTTCTCATTCAGACACCGGTAAGAAGGTGGCCCCGCGGAGGAGGGATGTGAGCGACGGCAGCAGCGAGGGCCGGAAATGTCTGCATTGCGCAACGGACAAAACGCCACAGTGGCGAACCGGTCCCATGGGCCCGAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCGGAGTACAGGCCCGCCGCAAGCCCAACTTTTGTGCTGACAAAACACTCGAACTCTCACCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGCAGCAGTTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTTCCATCCAACGGTGAGGATTACTTGATCCACCCAATGGGCTCCCACTTCACACACCTCATCTAA 945 0.5608 MEAQEFFQNSFYPQFPSDNITASNTNASTTDHFIVEDFFDFSNSDEAPLVDATFDSLPTDHSSAVTNLDSTTNNSNFSAADGHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDTASETREPNPGVFNPQVSVRGKARSKRSRGPPCNWSSRLVVLSPNNTMSSESSHSDTGKKVAPRRRDVSDGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLIHQXMGSHFTHLI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02797 315 FunFam GATA transcription factor 195 282 - -
Viun9g02797 315 ProSitePatterns GATA-type zinc finger domain. 206 231 IPR000679 GO:0006355|GO:0043565
Viun9g02797 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 264 - -
Viun9g02797 315 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Viun9g02797 315 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355|GO:0043565
Viun9g02797 315 Gene3D - 199 250 IPR013088 GO:0006355|GO:0008270
Viun9g02797 315 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355|GO:0043565
Viun9g02797 315 PANTHER GATA TRANSCRIPTION FACTOR 22 279 - -
Viun9g02797 315 MobiDBLite consensus disorder prediction 185 205 - -
Viun9g02797 315 MobiDBLite consensus disorder prediction 127 205 - -
Viun9g02797 315 SMART GATA_3 200 250 IPR000679 GO:0006355|GO:0043565
Viun9g02797 315 PIRSF Txn_fac_GATA_plant 1 295 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun9g02797 315 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02797 Viun-Chr9 36654576 36656184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02797 30 315 C2C2-Gata Transcription Factor Family AT5G25830 50.453 2.38e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g02797 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02797 - - gmx:100776588 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02797 9 36654576 36656184 Viun9g02797 9 36654576 36656184 ECH