Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun9g02797 | ATGGAAGCACAAGAGTTCTTCCAGAACTCCTTCTACCCTCAATTCCCCTCCGACAACATAACTGCCTCCAACACCAACGCCTCCACCACCGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCCAACAGCGACGAGGCCCCCCTTGTCGACGCCACCTTTGACTCTCTCCCCACTGACCACTCTTCCGCCGTAACCAACCTCGACAGCACCACCAACAACTCCAATTTCTCAGCCGCCGACGGTCATTTCTCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCTGAATTGGAATGGCTGTCGAAATTCGCGGAGGAGTCGTTTTCCAGTGAGGATTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGACACCGCATCGGAAACACGAGAGCCGAACCCGGGTGTGTTCAACCCGCAAGTATCAGTTCGGGGCAAGGCGAGGAGTAAGCGGAGTCGTGGGCCCCCATGCAATTGGTCCTCTCGACTGGTCGTCCTCTCTCCGAACAACACCATGTCTTCGGAGTCTTCTCATTCAGACACCGGTAAGAAGGTGGCCCCGCGGAGGAGGGATGTGAGCGACGGCAGCAGCGAGGGCCGGAAATGTCTGCATTGCGCAACGGACAAAACGCCACAGTGGCGAACCGGTCCCATGGGCCCGAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCGGAGTACAGGCCCGCCGCAAGCCCAACTTTTGTGCTGACAAAACACTCGAACTCTCACCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGCAGCAGTTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTTCCATCCAACGGTGAGGATTACTTGATCCACCCAATGGGCTCCCACTTCACACACCTCATCTAA | 945 | 0.5608 | MEAQEFFQNSFYPQFPSDNITASNTNASTTDHFIVEDFFDFSNSDEAPLVDATFDSLPTDHSSAVTNLDSTTNNSNFSAADGHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDTASETREPNPGVFNPQVSVRGKARSKRSRGPPCNWSSRLVVLSPNNTMSSESSHSDTGKKVAPRRRDVSDGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLIHQXMGSHFTHLI | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun9g02797 | 315 | FunFam | GATA transcription factor | 195 | 282 | - | - | |
Viun9g02797 | 315 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 231 | IPR000679 | GO:0006355|GO:0043565 | |
Viun9g02797 | 315 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 264 | - | - | |
Viun9g02797 | 315 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Viun9g02797 | 315 | Pfam | GATA zinc finger | 206 | 239 | IPR000679 | GO:0006355|GO:0043565 | |
Viun9g02797 | 315 | Gene3D | - | 199 | 250 | IPR013088 | GO:0006355|GO:0008270 | |
Viun9g02797 | 315 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 236 | IPR000679 | GO:0006355|GO:0043565 | |
Viun9g02797 | 315 | PANTHER | GATA TRANSCRIPTION FACTOR | 22 | 279 | - | - | |
Viun9g02797 | 315 | MobiDBLite | consensus disorder prediction | 185 | 205 | - | - | |
Viun9g02797 | 315 | MobiDBLite | consensus disorder prediction | 127 | 205 | - | - | |
Viun9g02797 | 315 | SMART | GATA_3 | 200 | 250 | IPR000679 | GO:0006355|GO:0043565 | |
Viun9g02797 | 315 | PIRSF | Txn_fac_GATA_plant | 1 | 295 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Viun9g02797 | 315 | MobiDBLite | consensus disorder prediction | 166 | 184 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun9g02797 | Viun-Chr9 | 36654576 | 36656184 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun9g02797 | 30 | 315 | C2C2-Gata Transcription Factor Family | AT5G25830 | 50.453 | 2.38e-87 | 263 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Viun9g02797 | GATA | 2.8e-15 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun9g02797 | - | - | gmx:100776588 | 473.396 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun9g02797 | 9 | 36654576 | 36656184 | Viun9g02797 | 9 | 36654576 | 36656184 | ECH |