Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02787 ATGTCTGAGCTGCGTACCCGAACTCGCAGAAACCGACTCGTAGACAACGCAAACGCTATCCCGATCATTCAGCCAGCCTCGCCGGCGGCCACCAGAACTCGACGGAGGAAGACATCCGCCGCGGCTGCCCGAACACGAAGGAATCGGGGACAGAACGACACGATCGCCGCCGCCGATGAAATCGTGAATGATTGTGCTGTTGTTGTTGCTGTTTGCGGAGCCAGAAATAGAAATAAAAATTTAAAAGACGAGCTGGGAGAGAAAGAGAATAACAACAATAAGATTTCGGTTAGGGTTTTTGAAGAGGAAGACATGGATGAAGACGATAGCCGTGGCCGTAGCGCAGATAAGGCTCCGGGAGCTGAAGATGAAGGCAGCACTGCCCCCCTTCCGGAGAAGGTTCAAGTTGGTGGTTCTCCTTTGTATAAAATTGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGTCGGCGGATAGGACTTTCGGATTCTAGCGAACGGACTGGTGCCGGTGCCGTTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGATGCAACTATGGACCACCATATGAATGGCAGGTTTACAATGCATTAGGCGGTAGTCATGGTGTTCCACGAGTACATTTCAAGGGACGGCAAGGGGACTACTATATTATGGTAATGGATATGCTTGGTCCCAGTCTGTGGGATGTTTGGAATAACAACTCTCACACCTTGTCTACTGAAATGGTAGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGAACCCCAGGAACTCCAGATGAAAAGAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGAGATAGTTCAACTGGCCTTCATGTTGAATATGATCAACGTCCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCACATCTCGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTCCTTCTTCGAGGTCGGCTTCCTTGGCAAGGATATCAGGGAGAAAATAAAGGGTTTTTTGTCTGCAAGAAAAAGATGACCACCTCTCCAGAAATATTGTGTTGCTTTTGTCCTCATCCTTTCCGGCAGTTTGTTGAATATGTAGTTAATTTAAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTCTTTGATGGAATTGTGGGCCCAAATCCAAATATCAGGCCAATAAACACCGAGGGTGCTCAGAAGCTTATATGTCAGGTTGGGCATAAGAGGGGGCGTTTGACCATGGAAGACGATGATGATGAACAACCAAAAAAAAGGGTTCGAATGGGAATGTCTGCTACACAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTCGCTGATGTGCGGTTAGCCCAACACATTGATAAAGGGAATGAAGATGATTTATTTATCAGCAGTGTGGCTTCTTGTTCTGATCTTTGGACACTCATTATGGATGCTGGTACTGGTTTCACTGAACAAGTTTATGAACTCTCTTCCAGCTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATTAGTGCCATAGCCGGAGTTTATACTGGATGCTCATTGGTTGTAATGTCTAAAGGTACCCAGTACGTACAGCAATCCTATAAAGTCAGTGAATCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTAACTGCTATGGCTACAGCTGGCAGTAGATGGGCAATTGTTATGTCACGTGGGGCTGGTTATTCTGATCAGGTTGTGGAACTTGATTTCTTGTATCCCAGCGAAGGTATTCATCTAAGGTGGGAAAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGACCAGGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACACTCCGTACAAATGCTTTTCCTAGCTCTCATGTCAAGGATAAATGGGCAAAGAATCTCTATATTGCATCTATTTGCTATGGGAGAACAGTGTCATAA 2130 0.4418 MSELRTRTRRNRLVDNANAIPIIQPASPAATRTRRRKTSAAAARTRRNRGQNDTIAAADEIVNDCAVVVAVCGARNRNKNLKDELGEKENNNNKISVRVFEEEDMDEDDSRGRSADKAPGAEDEGSTAPLPEKVQVGGSPLYKIERKLGKGGFGQVYVGRRIGLSDSSERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTLSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFFVCKKKMTTSPEILCCFCPHPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPNIRPINTEGAQKLICQVGHKRGRLTMEDDDDEQPKKRVRMGMSATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDDLFISSVASCSDLWTLIMDAGTGFTEQVYELSSSFLHKEWIMEQWENNYYISAIAGVYTGCSLVVMSKGTQYVQQSYKVSESFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHLRWENGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTNAFPSSHVKDKWAKNLYIASICYGRTVS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02787 709 PANTHER CASEIN KINASE-RELATED 142 679 - -
Viun9g02787 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Viun9g02787 709 Pfam Protein kinase domain 142 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02787 709 Gene3D Transferase(Phosphotransferase) domain 1 110 462 - -
Viun9g02787 709 ProSitePatterns Protein kinases ATP-binding region signature. 148 181 IPR017441 GO:0005524
Viun9g02787 709 SUPERFAMILY Protein kinase-like (PK-like) 142 423 IPR011009 -
Viun9g02787 709 MobiDBLite consensus disorder prediction 28 50 - -
Viun9g02787 709 ProSiteProfiles Protein kinase domain profile. 142 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02787 709 MobiDBLite consensus disorder prediction 92 136 - -
Viun9g02787 709 CDD STKc_CK1 142 418 - -
Viun9g02787 709 FunFam casein kinase 1-like protein HD16 115 465 - -
Viun9g02787 709 Coils Coil 78 98 - -
Viun9g02787 709 SMART serkin_6 142 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02787 Viun-Chr9 36541954 36549027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02787 237 418 MAP Kinase Kinase Kinase AT5G50180 25.543 5.85e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Viun9g02787 Pkinase 5.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02787 - - gmx:100779382 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02787 9 36541954 36549027 Viun9g02787 9 36541954 36549027 ECH