Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02724 ATGTCTCCACCATTGCTGGGAATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGACCTTAGAATTGAAAGAACGCAACTACATGGGTTTATCTGATTGTTCTTCTGTGGACAGTTCAGTTCCGTCCTTCTCAGAAGAGACTAAAAGTAACCTGAACCTGAAAGCCACAGAGCTCAGGCTTGGGCTTCCGGGATCACAATCCCCTGAAAGAGATTCCGATTTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGATGATCACCATTCTTCAACCAAGACTGCTATTTTGGGAAACAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCAGAGGGGAAGTTCCTAGTTGATTCGGAGAACAATCCTATACTATCTCCGAGGCCCGGTTCTAACTTGGGATTAAATCCTTGTTCTACACTTGAGAAGGCTGGGACTCAGCAAAACAAAATGAAAGAAGCAGCAATAGCAAAGGAGCCTCATTCTGTCAATGAAACTAGACCAAGTATTGATTGTTCTGCAAATAACAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTTAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTGGACTTGAATAACTACTCTGCATATCCAGAATTATCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTCGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGCTCCCAGGGCTGTTGAAAAAAGTAAAAGCAGGAGCTAG 1092 0.435 MSPPLLGIGEEEGKSNVTLLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELRLGLPGSQSPERDSDFCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAILGNKRGFSDAMNGFSEGKFLVDSENNPILSPRPGSNLGLNPCSTLEKAGTQQNKMKEAAIAKEPHSVNETRPSIDCSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGALFVKVSMDGAPYLRKVDLNNYSAYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02724 363 Pfam AUX/IAA family 71 354 IPR033389 -
Viun9g02724 363 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Viun9g02724 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 350 IPR003311 GO:0005634|GO:0006355
Viun9g02724 363 FunFam Auxin-responsive protein 238 355 - -
Viun9g02724 363 Gene3D - 238 357 - -
Viun9g02724 363 SUPERFAMILY CAD & PB1 domains 242 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02724 Viun-Chr9 36035129 36040126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02724 247 353 B3 DNA Binding Superfamily AT4G23980 31.776 2.43e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun9g02724 AUX_IAA 8.2e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02724 K14484 - gmx:100783314 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02724 9 36035129 36040126 Viun9g02724 9 36035129 36040126 ECH