Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02709 ATGTCCGGCCCAGGGGTACGGTTGCACATCCAAGATCACAATGTGGTGATGGATAATGGCATAGTCCAGGTTACGCTATCAAATCCAGGTGGGATTGTCACTGAGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGTCTAATAGAGGGTACTGGGACCTCGTTTGGAGTGCGCCAGGAAGCAAAGGGATCTTTGATGTGATTCATGGAACTTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCTTTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTTATAATGCTCCGCGGTTCATCTGGCTTCTACTCTTACGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTCGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACGATAGGCGAAGGATTCTTCCTTATCCAGAAGATCGGTTACCCGGAAGATGCCAAACCTTGGGCTATGCAGAAGCTGTCCTACTAACCGATCCCAAAGACCGACAATTGCAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACAAGGATAATCGAGTTCATGGGTGGATATCTTTCAGCCCACCAATAGGCTTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCACACGTAGGGCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTCTTCGGTCCTGTATATCTTTATTTCAATTCTGCACCAGTTGGTGACGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAACGGGGCAATGTCAGTGGCAGATTACTTATCTTAGACAAGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGCCTGGCTCCACCTGGAGATGCAGGGTCGTGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTCTGTGAAGATAACGCCAGGTTCTTACACTGAATTTGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCTGGTGCAGAATTTTATGCTCCTGATCCCAATCCCCAATATGTTAATAAGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGAAAGATACACAGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAGTGACTATAGGAAGGATTGGTTTTATGCGCAGGCTCCAAGGAAAAAAGAGGATAACACTCTTCAAGGGACCACCTGGCAAATCAAGTTCGAAGTCAGAAGCGTGGTTAAGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGGTTAGAGTAAATGATCCCAAGACTGCGCGACCACTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCACGGAATCCATTGGCTTTACAATGTGAGTATACCAGGTTCTCTTCTTGTTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCAACAGTCCCTATCAAGGTATCATGTATGATTATATTCGTTTGGAAGCCCCACCTTGTGAAGGAATTTAA 1911 0.4275 MSGPGVRLHIQDHNVVMDNGIVQVTLSNPGGIVTEIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIHGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLGETRITFKLRKDKFQYMAMADDRRRILPYPEDRLPGRCQTLGYAEAVLLTDPKDRQLQGEVDDKYQYSCANKDNRVHGWISFSPPIGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGESWKKVFGPVYLYFNSAPVGDDPLWLWEDAKIQMMNEVQSWPYYFPASEDFLKSDQRGNVSGRLLILDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDSVKITPGSYTEFGELVYEPPRDGPTLWEIGIPDRSGAEFYAPDPNPQYVNKLFINHPDRFRQYGLWERYTELYPDADLVYTVGVSDYRKDWFYAQAPRKKEDNTLQGTTWQIKFEVRSVVKGSTYKLRVAIASATLAELQVRVNDPKTARPLFTSGLIGRDNSIARHGIHGIHWLYNVSIPGSLLVDGTNTIYFTQPRCNSPYQGIMYDYIRLEAPPCEGI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02709 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 632 - -
Viun9g02709 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Viun9g02709 636 Gene3D - 328 427 - -
Viun9g02709 636 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Viun9g02709 636 SUPERFAMILY Starch-binding domain-like 374 428 IPR013784 GO:0030246
Viun9g02709 636 CDD RGL4_C 442 629 - -
Viun9g02709 636 Gene3D - 8 302 IPR014718 GO:0030246
Viun9g02709 636 CDD RGL4_N 6 298 - -
Viun9g02709 636 Gene3D - 438 629 - -
Viun9g02709 636 CDD RGL4_M 331 430 IPR029413 -
Viun9g02709 636 FunFam Rhamnogalacturonate lyase B 328 426 - -
Viun9g02709 636 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Viun9g02709 636 SUPERFAMILY Galactose mutarotase-like 14 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun9g02709 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02709 Viun-Chr9 35917174 35923102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02709 1 632 Polysaccharide Lyase AT1G09910 70.253 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02709 K18195 - gmx:100814185 1211.05