Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02708 ATGCCGTTACTGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAACACTCACTTTATCAAATCCTGGAGGAATCGTGACTGGAATACAGTACAATAACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGGTATTGGGACCTTGTTTGGAGCTCACCGACAAGTACAGGAACCAGTGGTACATTTGATGTCATCAAAGGAACAAAGTTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGACGTGGGACGTCTCTCTAGAGGGCAAGTTGGTACCTTTAAACATTGACAAAAGGTTCATAATGCTTCGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTACAGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGACTTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTACATGGCCATGGCTGATAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTAGCACCTAAGGGGAAAGCCCTTGCCTACCCAGAAGCTGTTCTACTTGTTAATCCCATCGAACCAGAGCTTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGGTTCTGGCTTATTACGCCCACCGATGAGTTTCGATCTGGTGGGCCCCTCAAACAAAACTTAACTTCTCATGTTGGCCCCACCACGCTTGCCGTGTTTCTGAGTGCACATTATTCTGGAGAGGATTTGGTGCCTAAGTTTAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTTCCTATGATGGAGGTGACCCCCTTATGCTATGGGACGATGCTAAACAACAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGAATCGGAGGATTTTGCGAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTGTATAAACGATGACTATATCTCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCTCCAGGCGATGTGGGATCATGGCAACGAGAATGCAAGAATTACCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCACCATCACCAATGTACTTGCAGGAGATTACAATGTTTACGCCTGGGTGCCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAACAGAAGGCTGTGACATCGACCTTGGTGAGCTTGTGTATGAACCTCCTAGAGATGGTCCAACAGTGTGGGAAATTGGCATTCCCGATCGAACAGCTGCTGAGTTCTATGTTCCCGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCAGACAAGTTTAGACAATATGGATTGTGGGAGAGATACGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTGTGAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTCCAAGGAACCACATGGCAGATCAAGTTTCAGCTCGATAAGGTGAACACAACCAGTAGCTATAAACTTCGGGTGGCTTTGGCATCAGCAACACTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGAGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAGTGTAGACATTGCAGGAACTCAATTTGTTGAAGGAGATAATACCATCTTTTTAACACAGAGCAGAGGAAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTCTGGAAGCTCCACCATCATCTAATATCAATAACACAAAGTGA 1932 0.4337 MPLLGVQLTIQDNHVVMENGILTLTLSNPGGIVTGIQYNNIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTKFQVMVENEDQVEVSFTRTWDVSLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLQEWPAFNLDETRLAFKLRKDKFHYMAMADNRQRNMPLPDDRLAPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLMLWDDAKQQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVRERCINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFTITNVLAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDLGELVYEPPRDGPTVWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDKVNTTSSYKLRVALASATLSELQVRVNNPKSPRPLFSSGLIGRDNSIARHGIHGLYWLYSVDIAGTQFVEGDNTIFLTQSRGNSPFQAIMYDYIRLEAPPSSNINNTK 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02708 643 Gene3D - 5 301 IPR014718 GO:0030246
Viun9g02708 643 SUPERFAMILY Galactose mutarotase-like 8 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun9g02708 643 Gene3D - 333 425 - -
Viun9g02708 643 FunFam Rhamnogalacturonate lyase B 331 430 - -
Viun9g02708 643 CDD RGL4_C 445 632 - -
Viun9g02708 643 SUPERFAMILY Starch-binding domain-like 373 423 IPR013784 GO:0030246
Viun9g02708 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Viun9g02708 643 CDD RGL4_M 334 433 IPR029413 -
Viun9g02708 643 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Viun9g02708 643 CDD RGL4_N 8 304 - -
Viun9g02708 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Viun9g02708 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 635 - -
Viun9g02708 643 Gene3D - 441 632 - -
Viun9g02708 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02708 Viun-Chr9 35908616 35912804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02708 1 634 Polysaccharide Lyase AT1G09890 69.969 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02708 K18195 - gmx:100814721 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02708 9 35908616 35912804 Viun9g02708 9 35908616 35912804 ECH