Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02707 ATGAACTTCACTAAACACTTTCTGTTCTTGATGCTGCAATTCCTCGTGGTTCTGGGAGGTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGGTAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACGGGAATTCGATATAATGGCATCGACAATTTGCTGGAAGTTCTCAACGAAGAATACGACAGAGGGTACTGGGACATTGTTTGGGACGAAGGTGGAGAAAATAGAACAGAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCAACAAATTTAACGGTGATAGTGGAAAACGAAGAACAGGTAGAGCTATCTTTCACCAGAACATGGAATGCGTCTTTTCAGGGGAAGCTTCCGCCACTCAACATTGACAAAAGGTTTATATTGCTTCGTGGTTTCTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATATCGACAATACTAGGATCGCATTCAAACCTAGGAAAGACAAGTTCCATTACATGTCTATAGCGGACAACAGGCAAAGATTTATGCCTCTGCCCGATGACCGGATTCCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTCGTTGACCCCGTGGAGCCCGAATTCAAAGGCGAGGTGGATGATAAATATGAGTATTCGTGCGAGAGTCGAAACGATCGTGTTCACGGCTGGATGAGCATTGATCCCTTGAATTCCACCGGATTCTGGCTAATTACGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGAGCGGATCTGATAATGAAATTTGGGCCTAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCTTGTACCTTAATTCTCTATCCAACGGGGTTAGCCCAGTCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAGAGCTGGCCCTATACATTTCCAGCTTCAAAGGACTTTCTCTCAGCTGAGCAACGAGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGAAGGTTAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGAAGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACGATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGTCCTGGGGATTATAATCTCTACTCCTGGGTCAATGGATACATTGGAGATTATCAATTCGATCAAATCATCAACGTAACTTCAGGTTCTGAAATTAATGTGCATGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGTATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAATCATACAGACAGGTTTAGGCAATATGGTTTGTGGGAAAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGCGTGAATACCCATGGAAGCTACACATTACGAGTGGCTCTGGCATCTGTGCATAATGCAGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCACCTTTATTTTCAAGTGGAGTGATTGGAAAAGAGAATACAATAGCTAGACATGGAATTCACGGTCTCTATTGGCTATTCAGCCTTGATGTAGACGACACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACGCAAACGATGAACACAAGTCCTTTTATAGGAATTATGTACGACTATATTCGTTTAGAATATAAACGCTGA 1992 0.4287 MNFTKHFLFLMLQFLVVLGGDTKPGVRLDIQDKHVVMDNGIVQVNLSNPEGIVTGIRYNGIDNLLEVLNEEYDRGYWDIVWDEGGENRTEKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRTWNASFQGKLPPLNIDKRFILLRGFSGFYTYAIYEHLKEWPAFDIDNTRIAFKPRKDKFHYMSIADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYSCESRNDRVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMKFGPNEPWKKVYGPIFLYLNSLSNGVSPVKLWEDAKQQMVNEVESWPYTFPASKDFLSAEQRGKVQGRLLVRDRKVSDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVNGYIGDYQFDQIINVTSGSEINVHELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTHGSYTLRVALASVHNAELQIRINKLEADPPLFSSGVIGKENTIARHGIHGLYWLFSLDVDDTLLVQGNNTIFLTQTMNTSPFIGIMYDYIRLEYKR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02707 663 CDD RGL4_N 31 322 - -
Viun9g02707 663 FunFam Rhamnogalacturonate lyase B 359 458 - -
Viun9g02707 663 Pfam Rhamnogalacturonate lyase family 27 229 IPR010325 -
Viun9g02707 663 Gene3D - 169 321 IPR014718 GO:0030246
Viun9g02707 663 Pfam Polysaccharide lyase family 4, domain II 385 457 IPR029413 -
Viun9g02707 663 CDD RGL4_C 473 660 - -
Viun9g02707 663 SUPERFAMILY Galactose-binding domain-like 468 661 IPR008979 -
Viun9g02707 663 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 31 661 - -
Viun9g02707 663 Pfam Polysaccharide lyase family 4, domain III 471 659 IPR029411 -
Viun9g02707 663 SUPERFAMILY Starch-binding domain-like 360 459 IPR013784 GO:0030246
Viun9g02707 663 Gene3D - 359 459 - -
Viun9g02707 663 CDD RGL4_M 362 461 IPR029413 -
Viun9g02707 663 Gene3D - 469 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02707 Viun-Chr9 35896654 35901100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02707 26 660 Polysaccharide Lyase AT1G09890 65.047 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02707 K18195 - gmx:100786488 1231.08