Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02706 ATGGCTCCTGCACCCTCCATCTTCCTCCTCCTCCTCACTCTCCTTCTACTCCTTACAAACGCAGCACACACCAGAGAAACTCCACCTCCCACTCCCCAACGAATCATTGCTCCACCGCCGCCCGACAACGAAAATGACACCTCGCCGCCGTTCAGACCTGGCATAGCGGTGGTGGTATGCGTTTTGACCACCATAATCTCCCTCACCTCGCTGCTCCTTCTTTACATCAAACACTGCAACGGCGGCAACATCCACAGCGGCGGGAGCTCGATTCCGTGGACGGTGGCGCCGTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAAAAGGAGGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTGTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGCCTTTCCGCTGCCAAACTCAGCCCCAGCGCAACAGCCACAACAACAATTCCTCCAACCAGGAACGCGCGCGGTTGAATATGGACGTGGAGAAGCAGGAGATTGGGCGGAGGCATTCGTCGGTGGGGGAGAGCGGAACGGAGGAGCAGAGCCGGAGGTGGACGACGTCGTTCAGGAGGTCGTTGGATAGCGCGACATCGAGAAAAAAGAACGAGAGCGTTGGTGTTGGTGTTGGTGTTGTTGGGTTTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGTTGTTGACGCAAGAAACGGAGAGAGAGGGAGATAGGACAAGCGCGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGACCCGGCCCGGGCCCAGGCCCGGGAAAAATGAAAATGAATGGGGTCCATCAGCGATGGAGCGATGTCCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCGGCGGAGGAAGAGGAAGGGGGACGCGCCGTTCCAATGATGATGGGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTCAGCAGGTTCTCCAGCAATAGCAATAATAATAACGAGGAGGACACAGATAGACACAGAGACAGAGAGTGGGAGCAACAAAGACAAGGACATGGAGAGAGAGAAGAGGGTCTCGTCAGAAGGTGGTTGGGTTGGATTTCCAAGTCTCACACACAACAACAACATCATCAACGACAACAAACACATTCCCAAACCCAACCATAG 1371 0.5646 MAPAPSIFLLLLTLLLLLTNAAHTRETPPPTPQRIIAPPPPDNENDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGNIHSGGSSIPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRCQTQPQRNSHNNNSSNQERARLNMDVEKQEIGRRHSSVGESGTEEQSRRWTTSFRRSLDSATSRKKNESVGVGVGVVGFGWFVRGRKDGMLLTQETEREGDRTSAERRLEHRIIVSPGPGPGPGPGKMKMNGVHQRWSDVQASDLLYLTSEMIMSEAQWNTRGGGRGRGTRRSNDDGVEDSWSGRGIINSRSVSEITGFSRFSSNSNNNNEEDTDRHRDREWEQQRQGHGEREEGLVRRWLGWISKSHTQQQHHQRQQTHSQTQP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02706 456 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Viun9g02706 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 180 IPR013083 -
Viun9g02706 456 Pfam Ring finger domain 130 173 IPR001841 -
Viun9g02706 456 MobiDBLite consensus disorder prediction 25 48 - -
Viun9g02706 456 SUPERFAMILY RING/U-box 125 178 - -
Viun9g02706 456 MobiDBLite consensus disorder prediction 349 376 - -
Viun9g02706 456 MobiDBLite consensus disorder prediction 401 425 - -
Viun9g02706 456 MobiDBLite consensus disorder prediction 390 425 - -
Viun9g02706 456 CDD RING-H2_EL5-like 130 173 - -
Viun9g02706 456 SMART ring_2 131 172 IPR001841 -
Viun9g02706 456 MobiDBLite consensus disorder prediction 234 249 - -
Viun9g02706 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 438 - -
Viun9g02706 456 MobiDBLite consensus disorder prediction 31 47 - -
Viun9g02706 456 MobiDBLite consensus disorder prediction 221 258 - -
Viun9g02706 456 FunFam RING-H2 finger protein ATL43 106 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02706 Viun-Chr9 35893020 35895006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02706 53 434 C3H Transcription Factor Family AT5G05810 44.769 9.62e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02706 K19041 - gmx:100794083 411.764