Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02682 ATGGAATTTGACGAGCAAGAAGACCATGAAGAGGAGGAAGAAGAGGAAGACGAGGAGGAAGAAGAAATGGGATTCTCGGTGGCGGCGCCGGGTTATGACTCCTTCGGAAACATGGCGGCCAGGTCTAAAATAAGCGCAGCTGAGGGAGTTCCGGCCACCGTCAACTCCGGTCGTAAAGGCAGCTCCACAGGGACGGTCAGATACAGAGAATGTCAAAAGAATCATGCCGTCAGCATAGGTGGTCACGCCGTTGATGGCTGCTGCGAGTTCTTGGCCGCCGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCGGCGTGTAACTGCCACCGCAATTTTCACCGCAAGGAGATCGATGGCGAAATCAGTCCTTACCAACTGCGCTCGCAGCCGCAACCGCAACCTCTGCATCCTCAGTATCACCACCAATTCTCCCCTTATTACCACCGTGGGCCACCACCTTCCTCCGCAGGATACCTCCACCACCACCTGTTAACCCCTCCGGTGTCGCAGCACCGGCCTTTGGCGCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCAAGCGGCGGCGGAGGAGGTGGTGGTTTTGGCGGTGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTGGGGTGGAGAATTCAGAAACACGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACATGTTCTCAAGGTCTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGCTCTACCATGATTGCGAATTCTGAACTCTCTTAA 909 0.5402 MEFDEQEDHEEEEEEEDEEEEEMGFSVAAPGYDSFGNMAARSKISAAEGVPATVNSGRKGSSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQLRSQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHHHLLTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGGFGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTMIANSELS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02682 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Viun9g02682 302 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
Viun9g02682 302 SUPERFAMILY Homeodomain-like 203 274 IPR009057 -
Viun9g02682 302 MobiDBLite consensus disorder prediction 1 34 - -
Viun9g02682 302 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g02682 302 NCBIfam homeobox domain, ZF-HD class 216 272 IPR006455 -
Viun9g02682 302 Gene3D - 205 279 - -
Viun9g02682 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 275 - -
Viun9g02682 302 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Viun9g02682 302 MobiDBLite consensus disorder prediction 170 217 - -
Viun9g02682 302 FunFam Zinc-finger homeodomain protein 2 209 277 - -
Viun9g02682 302 Coils Coil 1 23 - -
Viun9g02682 302 MobiDBLite consensus disorder prediction 277 302 - -
Viun9g02682 302 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02682 Viun-Chr9 35686169 35688048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02682 17 275 ZF-HD Transcription Factor Family AT4G24660 49.434 1.83e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun9g02682 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02682 - - pvu:PHAVU_009G037900g 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02682 9 35686169 35688048 Viun9g02682 9 35686169 35688048 ECH
Viun8g01576 8 26386168 26387352 Viun9g02682 9 35686169 35688048 PCT