Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02676 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACCGCGAGGCAAGTAACATTTTCTAAGAGAAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTTTGTGATGCTGATGTTGGTCTCATAGTTTTCTCATCTACAGGGAAACTCTTTGATTATAGCAGTTCCAGTATGAATGGCATAATTACCAAGTATAATTCGCATTCCCCTGGCATTGACAAATTGGACAGGCCATCACTAGAAATGCAGCTAGAGACTACCTCCAAATTGAGTAAGGAAGTTGCAGAGAGAACCCAAGAACTAAGTTGGATGAAAGGTGATAATCTTCAAGGACTAGGCCTAGATGAGTTGCAGCAACTGGAGAAAAAACTTGAAAGTGGACTCGACCGTGTGATTGAGATAAAGGAAAAGCAGATGATGGGTCAGATTTCAGAACTTCAGAAAAAGGGAATCGTGTTGGAAGAAGAGAACAAGCATTTAAAGAAAAAGCTGGCGGAGACGGAGATGGAGGCTATGGCTATGGTGCGTAAAACAAAAATGCATTTTTTGATGGAGTCAAATATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCCTGTTGAAGATGGTTCCTCGGACACGTCTCTCAAGTTAGGGTTACCCTTCTCTAACTGA 702 0.4188 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNGIITKYNSHSPGIDKLDRPSLEMQLETTSKLSKEVAERTQELSWMKGDNLQGLGLDELQQLEKKLESGLDRVIEIKEKQMMGQISELQKKGIVLEEENKHLKKKLAETEMEAMAMVRKTKMHFLMESNMGMQEEGVSLESTNNVSSCISDPPVEDGSSDTSLKLGLPFSN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02676 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Viun9g02676 233 Coils Coil 121 141 - -
Viun9g02676 233 Pfam K-box region 89 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g02676 233 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Viun9g02676 233 Coils Coil 147 181 - -
Viun9g02676 233 Gene3D - 14 75 IPR036879 GO:0003677|GO:0046983
Viun9g02676 233 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g02676 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Viun9g02676 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 MobiDBLite consensus disorder prediction 198 233 - -
Viun9g02676 233 FunFam Transcription factor, MADS-box 13 83 - -
Viun9g02676 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun9g02676 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02676 Viun-Chr9 35626039 35632383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02676 1 231 MADS-box Gene Family AT2G22540 54.812 6.02e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun9g02676 K-box 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02676 - - gmx:100776749 326.635