Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02675 ATGAAGCCAGCGTCCAAATCAAGTTTTTGCAGCTGGAAAATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACCGCGAGGCAAGTAACATTTTCTAAGAGAAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTTTGTGATGCTGATGTTGGTCTCATAGTTTTCTCATCTACAGGGAAACTCTTTGATTATAGCAGTTCCAGTATGAATGGCATAATTACCAAGTATAATTCGCATTCCCCTGGCATTGACAAATTGGACAGGCCATCACTAGAAATGCAGCTAGAGACTACCTCCAAATTGAGTAAGGAAGTTGCAGAGAGAACCCAAGAACTAAGTTGGATGAAAGGTGATAATCTTCAAGGACTAGGCCTAGATGAGTTGCAGCAACTGGAGAAAAAACTTGAAAGTGGACTCGACCGTGTGATTGAGATAAAGGAAAAGCAGATGATGGGTCAGATTTCAGAACTTCAGAAAAAGGGAATCGTGTTGGAAGAAGAGAACAAGCATTTAAAGAAAAAGCTGGCGGAGACGGAGATGGAGGCTATGGCTATGGTGCGTAAAACAAAAATGCATTTTTTGATGGAGTCAAATATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCCTGTTGAAGATGGTTCCTCGGACACGTCTCTCAAGTTAGGGTTACCCTTCTCTAACTGA 741 0.4197 MKPASKSSFCSWKMTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNGIITKYNSHSPGIDKLDRPSLEMQLETTSKLSKEVAERTQELSWMKGDNLQGLGLDELQQLEKKLESGLDRVIEIKEKQMMGQISELQKKGIVLEEENKHLKKKLAETEMEAMAMVRKTKMHFLMESNMGMQEEGVSLESTNNVSSCISDPPVEDGSSDTSLKLGLPFSN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02675 246 CDD MADS_MEF2_like 25 86 IPR033896 GO:0000977|GO:0045944
Viun9g02675 246 Gene3D - 27 88 IPR036879 GO:0003677|GO:0046983
Viun9g02675 246 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 MobiDBLite consensus disorder prediction 211 246 - -
Viun9g02675 246 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 Pfam K-box region 102 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g02675 246 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Viun9g02675 246 SUPERFAMILY SRF-like 15 87 IPR036879 GO:0003677|GO:0046983
Viun9g02675 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 194 - -
Viun9g02675 246 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g02675 246 FunFam Transcription factor, MADS-box 26 96 - -
Viun9g02675 246 Coils Coil 134 154 - -
Viun9g02675 246 Coils Coil 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02675 Viun-Chr9 35626023 35632480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02675 14 244 MADS-box Gene Family AT2G22540 54.812 7.08e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun9g02675 K-box 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02675 - - gmx:100776749 326.635