Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02672 ATGAAGAGTTTGACAAGGAGAGCCATCATGAGGAGTCTGACAAGGAGATCGATTTCGACGATGGCAATGACCATGGACATGGTGGCAGTGTCAAGGTCATGTAATGCTATAGCAGGAAAACCAATCGCGATTCCAATAATCCCTGGCCTTGGTATTATTGGGTTTGCTGTTTTTGGTCTTGAGCCTCTTGGGCGCCTGGGCAGGAAGATGTTTCTCCAAGAAGGTACTGATAGAAGTTGGAAGAAAAGTAGTGCATATTATATTTTGACATCTTATTTTCAACCTATGCTGCTGTGGACTGGAGTGATGCTCATCTGCAGGGATTTAGATCCACTAGTCCTATCATCAGAAACTAGTCAGGCTATGAAGCAACGGCTGCTGAGTTTCGTAAGATCTTTGTCAACAGTGCTTACTATTGCTTACTGTTCTTCAAGCTTAATTCAACAGGCACAAAAATTATGTATGGAGGCAAATGACTCCAGTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATATACTGCAGTTTGGGTTGCTGCTGTGTCATTGTTCATGGAGTTACTGGGTATCTCCACACAGAAGTGGTTGACTGCGGGTGGTTTGGGCACAGTATTGATTTCCCTTGCAGGTCGTGAGATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTTCTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAAGAATTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTATAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATAAAGACTCACCTGGCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATAATAGCTGATATGCGCAAGGTTTTGGCCAAACATCCTCAAGTAGAGCAGAGAAAATTGCACAGAAGGGTTTTTCTAGAGAACATTGATCCAGAAAATCAGGCTCTTATGATATTGGTGTCCTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTACGTGTAAAGGAGGTAATCCTCTTGGATCTTCTCAGAGTTATAAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAGAAAATGTACAGTGATACTGATTTCGATATTGATCCATTTGATGACACAGTTTCTTCTCGTTCCAGATCAACAAAAAACCGTCCTTTTGCACTGATAGATCCACCTTATAAAGTTAAACCTTCAACTCATTCAACTATTACAAATGAGGACAGAGATGGTAAGGTAGATGAAACCTTGCCATCTGACTTCAAAGTAGACTCTGATGAATTTTCTGTGACACCAAGTTCGGTCCAGAAGACCTCCAAATCCCAAAAGTCCAAAAAGTCAAAAACAACATCCAAAATTTTGTCAACATCCAATGAGTCTGGTTCTGGAGAGACTACTACACCATCAAAGCTAGATGATGAGAAATCTGATGTTTCCGAATCATCATCATCACCATCACTTGGTAATTCTTTGGAAGAGAATATTATTCTTGATGCTGCTTTGCTGGGCACAGAGAGAAGAACTATTGCAATTGATGAAGAATTGGTTGACTCTATCCCTTCAGAATCACAAGAAGTTGCAGCCCACCAGAATGGAAGTGAACTTCCAATTGGCAAGGATAAGAAGGATGAGCAGAATAGATGTTGA 1746 0.4055 MKSLTRRAIMRSLTRRSISTMAMTMDMVAVSRSCNAIAGKPIAIPIIPGLGIIGFAVFGLEPLGRLGRKMFLQEGTDRSWKKSSAYYILTSYFQPMLLWTGVMLICRDLDPLVLSSETSQAMKQRLLSFVRSLSTVLTIAYCSSSLIQQAQKLCMEANDSSDERNMSIDFTGKAVYTAVWVAAVSLFMELLGISTQKWLTAGGLGTVLISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVSGKVEHVGWWSPTRIRGSDCEAVHIPNHNLSINVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKHPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEVILLDLLRVISHHRARLATPIRTVQKMYSDTDFDIDPFDDTVSSRSRSTKNRPFALIDPPYKVKPSTHSTITNEDRDGKVDETLPSDFKVDSDEFSVTPSSVQKTSKSQKSKKSKTTSKILSTSNESGSGETTTPSKLDDEKSDVSESSSSPSLGNSLEENIILDAALLGTERRTIAIDEELVDSIPSESQEVAAHQNGSELPIGKDKKDEQNRC 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02672 581 Gene3D - 127 230 - -
Viun9g02672 581 MobiDBLite consensus disorder prediction 405 522 - -
Viun9g02672 581 SUPERFAMILY Sm-like ribonucleoproteins 216 286 IPR010920 -
Viun9g02672 581 MobiDBLite consensus disorder prediction 435 455 - -
Viun9g02672 581 MobiDBLite consensus disorder prediction 459 473 - -
Viun9g02672 581 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 11 578 IPR045042 -
Viun9g02672 581 MobiDBLite consensus disorder prediction 481 500 - -
Viun9g02672 581 MobiDBLite consensus disorder prediction 554 581 - -
Viun9g02672 581 Gene3D - 231 284 IPR023408 -
Viun9g02672 581 Pfam Mechanosensitive ion channel 173 380 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02672 Viun-Chr9 35592697 35604542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02672 28 580 Mechanosensitive Ion Channel Family AT5G10490 54.655 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02672 K22047 - gmx:100797302 813.142