Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02665 ATGGTCTGTCCAGGTTCAACGCAACTGTCTCATGACGTTAGGCTCAACAGTAATATTGGATTCTGCGGTTTTCATCGTCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAACAAGACTCTTCGACACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACGTGCCTTCCAAATGTAATGTTTTCATATGTCGGTCTGTCCTAACACCGGGTGGAGGGAGTGGAACTCCTCTCATGAAATCTGCTGGTGTTATTTTAACAAGATATTTATTCAGGTCATATGATGCTTTACAAAGGAACCCTGTTTTGCTTCAATTGATCCCAGCCCTTGGCATCATTGCCTTTGCTGCTTGCGGTCTTGAGCCACTCATTCGACTAAGCAGGGTTTTGTTCCTTCAAAGAACTGACAGCAGTTGGAAGAAGAGTAGTTCGCGATATATTATGACATCTTATTTTCAGCCATTGTTGTTATGGATTGGGGCAATGCTCATATGCAGGGCATTAGATCCAATTGTCCTACCATCTAAGTCCAGCCAGGTTGTGAAGCAGCGGCTTCTGAGTTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTGTGGAGGCAAATGACTCCAGTGGTTCAAGAAATGTGGGCTTTGATTTGGCTGGGAAGGCAGTATATGCTGCTGTTTGGGTTGCTGCCGTGTCATTGTTCATGGAGCTGTTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTTACTCTGGCCGGTCGCGAGATATTTACAAACTTTCTGTCAAGCATAATGATCCATGCCACTCGGCCATTTATTGTGAACGAGTGGATTCAAACGAAAATTGAAGGATACGAGGTTTCTGGCACAGTAGAGCATGTAGGATGGTGGTCACCAACCATTGTTAGAGGCGATGACCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATATTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCAAAAAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTTAATCTTGAAAATCAGGCTCTCATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGCGCCAGGCTAGCCACTCCCATCCGCACAGTTCAGAAAACATACGGTGAGGCTGACTCGGAAAATATACCTTTTGAGGACTCGATTTTCACCAGATCTAGAGCTGCAAATCGTCCATTCCTACTGATAGAACCACCATATAAAGTTCATGGTGAAGATAAAGTTAAACCCTCAACCCGTGCAGCTCGCGCAAATGAGGAAAAAGATTCCAGGATTGATGAAATCACGGCATCTGACACCAAAGGGGATGAGAATTCTGGAGCAACATCTACTTCGTCAGCTGATGTAAACAACTCCAGGGATAAATCCAAGTCATTTTCCGAATCACAGACTAAAAGGGAAAATGCAGAAGATGAACGAAAGGGAAGTACCGTTCCTGTATCTAGAAATCTATCTCAAAGTAATGTGCTTGAATCCTCTCCGGTTGCTACCCATGAGACCATTTCGGCTACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCTGTCTTATCGGTTAGAACTTCCTTGGAAGAGAACATTCTTCTCGGGGTTGCCTTAGAAGGCTCAAAACGAACACTTCCTATCGAAGAAGAAATTACTCCATCTCCCATGCCCACCGATTCACAAGAATTTGCTGTTCAACGGAACGGTGGTGGACCTCCTGCTAGCAAGGATAAGAAGGATGGTCAGTCTTCATTCCCAACTGATAAACAAAATGACTAG 2058 0.4266 MVCPGSTQLSHDVRLNSNIGFCGFHRHNRMGVGRLHLVTINLSPGSLKQDSSTLHLLSRLHAPIRHVPSKCNVFICRSVLTPGGGSGTPLMKSAGVILTRYLFRSYDALQRNPVLLQLIPALGIIAFAACGLEPLIRLSRVLFLQRTDSSWKKSSSRYIMTSYFQPLLLWIGAMLICRALDPIVLPSKSSQVVKQRLLSFVRSLSTVISFAYCLSSLIQQAQKFFVEANDSSGSRNVGFDLAGKAVYAAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNIVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNLENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKTYGEADSENIPFEDSIFTRSRAANRPFLLIEPPYKVHGEDKVKPSTRAARANEEKDSRIDEITASDTKGDENSGATSTSSADVNNSRDKSKSFSESQTKRENAEDERKGSTVPVSRNLSQSNVLESSPVATHETISATSSQSKQDEEKSSVLSVRTSLEENILLGVALEGSKRTLPIEEEITPSPMPTDSQEFAVQRNGGGPPASKDKKDGQSSFPTDKQND 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02665 685 Pfam Mechanosensitive ion channel 244 451 IPR006685 GO:0016020|GO:0055085
Viun9g02665 685 MobiDBLite consensus disorder prediction 501 530 - -
Viun9g02665 685 MobiDBLite consensus disorder prediction 501 685 - -
Viun9g02665 685 Gene3D - 302 355 IPR023408 -
Viun9g02665 685 MobiDBLite consensus disorder prediction 551 574 - -
Viun9g02665 685 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 676 IPR045042 -
Viun9g02665 685 MobiDBLite consensus disorder prediction 531 550 - -
Viun9g02665 685 Gene3D - 200 301 - -
Viun9g02665 685 MobiDBLite consensus disorder prediction 575 610 - -
Viun9g02665 685 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02665 Viun-Chr9 35581347 35587903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02665 9 658 Mechanosensitive Ion Channel Family AT1G58200 55.965 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02665 K22047 - gmx:100777815 1145.95