Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02639 ATGTATGATCCCTTGAACCAGATCGTCCCCGCCGAAGACAACGACGGCGACGCCTCCGACCAACACATCCATTACAGCTCCCACACCATAGAAGACGTTGGTGCCGTCGTCGAACACGTTTCCGCCGACTCCCTCTACGTTCCACCCCCTGAAATCTCTATCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACACCTGATAAGGTCCAAGCAGTATTGTTGCTCTTGGGAGGCAGTGAACTAACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGGTGTAGCAGAATTTCCTGCAAGGTGCAGTCTACCACAGCGAGTGGCATCGTTGAATAGATTCCGTCAGAAGAGGAAAGAGCGGTGCTTCGATAAGAAAGTTAGATATAGTGTACGACAAGAAGTTGCACTCAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAACCTCTTGTACACATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCATGAACTCTCTATTGTGCCACTTGAGCAGGTTGATGTGGGTAATAAGAATGGCTTGGACTGTCGGAGCAATATCCCTGCACAACATGAGAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 831 0.4862 MYDPLNQIVPAEDNDGDASDQHIHYSSHTIEDVGAVVEHVSADSLYVPPPEISIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGSQCAEELSPQNHAGVAEFPARCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNHELSIVPLEQVDVGNKNGLDCRSNIPAQHENHVNDNKALVSDR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02639 276 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g02639 276 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Viun9g02639 276 Pfam tify domain 57 87 IPR010399 -
Viun9g02639 276 Gene3D - 180 237 IPR013088 GO:0006355|GO:0008270
Viun9g02639 276 SMART GATA_3 183 236 IPR000679 GO:0006355|GO:0043565
Viun9g02639 276 SMART tify_2 53 88 IPR010399 -
Viun9g02639 276 MobiDBLite consensus disorder prediction 154 206 - -
Viun9g02639 276 Pfam GATA zinc finger 189 225 IPR000679 GO:0006355|GO:0043565
Viun9g02639 276 PANTHER GATA TRANSCRIPTION FACTOR 28 16 243 IPR045280 GO:0006355
Viun9g02639 276 ProSiteProfiles GATA-type zinc finger domain profile. 183 232 IPR000679 GO:0006355|GO:0043565
Viun9g02639 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 237 - -
Viun9g02639 276 Pfam CCT motif 121 163 IPR010402 GO:0005515
Viun9g02639 276 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Viun9g02639 276 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Viun9g02639 276 CDD ZnF_GATA 188 233 IPR000679 GO:0006355|GO:0043565
Viun9g02639 276 MobiDBLite consensus disorder prediction 162 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02639 Viun-Chr9 35371718 35376482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02639 2 244 Tify Gene Family AT4G24470 59.350 2.20e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g02639 CCT 6.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02639 - - pvu:PHAVU_009G035400g 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01631 8 27239853 27244293 Viun9g02639 9 35371718 35376482 PCT