LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g02638	ATGGCGTCAGTGAATCCGCAGCCTCTGCAGTACCAGGACCCTGCGATACCCGTCGACGACGACGACGACGATGACAGTGACGGCGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATGTTAGTTCAGTGAACGTGGTTGCTAATGCTGCGAGTGCGAATCATGAACCGCTGCCTGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCACGCAGGTGTTCCTGCTGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCAAAACGTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGTGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCTGTGAGAAAGGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGTTCATCTAATTGGGACTCTGTCCGGAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCTGTACGCAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCAAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGATATTCCTATTGATGTCAAGCCTACTTCTGTTATAGAAGGAGAATTGCCCGGAATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGGTGATGGTTCTAGTGGTCATGCAGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTACAAATGCTCCGCCATTAGGACTTGGTCATTCTTCAAGGAATGACACTGAACAGGAACCTCTGGTTGAACTTTCTAATCCTTCAGATACAGATATTGACATTCCAGAAAACTTTGATTAG	1056	0.4735	MASVNPQPLQYQDPAIPVDDDDDDDSDGADDDAMDELEDAHVSSVNVVANAASANHEPLPAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPAVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSVRSSAQDGTSHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPTSVIEGELPGIHDEQGSSEDPSKSNTGDGSSGHAVNPSDEELPETADHFTNAPPLGLGHSSRNDTEQEPLVELSNPSDTDIDIPENFD	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g02638	351	ProSiteProfiles	GATA-type zinc finger domain profile.	195	254	IPR000679	GO:0006355\|GO:0043565
	Viun9g02638	351	ProSiteProfiles	Tify domain profile.	62	97	IPR010399	-
	Viun9g02638	351	CDD	ZnF_GATA	200	244	IPR000679	GO:0006355\|GO:0043565
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	319	337	-	-
	Viun9g02638	351	ProSiteProfiles	CCT domain profile.	130	172	IPR010402	GO:0005515
	Viun9g02638	351	PANTHER	GATA TRANSCRIPTION FACTOR 28	21	345	IPR045280	GO:0006355
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	164	200	-	-
	Viun9g02638	351	Pfam	CCT motif	130	171	IPR010402	GO:0005515
	Viun9g02638	351	SMART	GATA_3	195	248	IPR000679	GO:0006355\|GO:0043565
	Viun9g02638	351	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	196	245	-	-
	Viun9g02638	351	Pfam	tify domain	64	96	IPR010399	-
	Viun9g02638	351	SMART	tify_2	62	97	IPR010399	-
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	171	194	-	-
	Viun9g02638	351	Gene3D	-	195	248	IPR013088	GO:0006355\|GO:0008270
	Viun9g02638	351	ProSitePatterns	GATA-type zinc finger domain.	201	228	IPR000679	GO:0006355\|GO:0043565
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	271	351	-	-
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	16	35	-	-
	Viun9g02638	351	MobiDBLite	consensus disorder prediction	1	35	-	-
	Viun9g02638	351	Pfam	GATA zinc finger	201	237	IPR000679	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g02638	Viun-Chr9	35362268	35367768	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g02638	68	243	Tify Gene Family	AT1G51600	58.919	6.34e-65	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Viun9g02638		CCT	1e-13	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g02638	-		-	vun:114164157	662.914