Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02637 ATGGCGTCAGTGAATCCGCAGCCTCTGCAGTACCAGGACCCTGCGATACCCGTCGACGACGACGACGACGATGACAGTGACGGCGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATGTTAGTTCAGTGAACGTGGTTGCTAATGCTGCGAGTGCGAATCATGAACCGCTGCCTGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCACGCAGGTGTTCCTGCTGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCAAAACGTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGTGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCTGTGAGAAAGGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGTTCATCTAATTGGGACTCTGTCCGGAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCTGTACGCAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCAAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGATATTCCTATTGATGTCAAGCCTACTTCTGTTATAGAAGGAGAATTGCCCGGAATCCATGATGAGCAAGTAGAAGCTTTTACATATTGCAAATTCATTTTCGGCAGTACACATTTTTTTCCTTTTCATGAAAACTTTTCATGGGGTATGCAGGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGGTGATGGTTCTAGTGGTCATGCAGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTACAAATGCTCCGCCATTAGGACTTGGTCATTCTTCAAGGAATGACACTGAACAGGAACCTCTGGTTGAACTTTCTAATCCTTCAGATACAGATATTGACATTCCAGAAAACTTTGATTAG 1140 0.4632 MASVNPQPLQYQDPAIPVDDDDDDDSDGADDDAMDELEDAHVSSVNVVANAASANHEPLPAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPAVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSVRSSAQDGTSHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPTSVIEGELPGIHDEQVEAFTYCKFIFGSTHFFPFHENFSWGMQGSSEDPSKSNTGDGSSGHAVNPSDEELPETADHFTNAPPLGLGHSSRNDTEQEPLVELSNPSDTDIDIPENFD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02637 379 ProSiteProfiles GATA-type zinc finger domain profile. 195 254 IPR000679 GO:0006355|GO:0043565
Viun9g02637 379 PANTHER GATA TRANSCRIPTION FACTOR 28 21 373 IPR045280 GO:0006355
Viun9g02637 379 MobiDBLite consensus disorder prediction 306 324 - -
Viun9g02637 379 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Viun9g02637 379 CDD ZnF_GATA 200 244 IPR000679 GO:0006355|GO:0043565
Viun9g02637 379 Gene3D - 195 248 IPR013088 GO:0006355|GO:0008270
Viun9g02637 379 MobiDBLite consensus disorder prediction 347 365 - -
Viun9g02637 379 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Viun9g02637 379 Pfam tify domain 64 96 IPR010399 -
Viun9g02637 379 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Viun9g02637 379 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 245 - -
Viun9g02637 379 SMART tify_2 62 97 IPR010399 -
Viun9g02637 379 MobiDBLite consensus disorder prediction 171 194 - -
Viun9g02637 379 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Viun9g02637 379 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Viun9g02637 379 MobiDBLite consensus disorder prediction 306 379 - -
Viun9g02637 379 MobiDBLite consensus disorder prediction 16 35 - -
Viun9g02637 379 Pfam CCT motif 130 171 IPR010402 GO:0005515
Viun9g02637 379 MobiDBLite consensus disorder prediction 1 35 - -
Viun9g02637 379 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02637 Viun-Chr9 35362268 35367778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02637 68 243 Tify Gene Family AT1G51600 57.609 4.45e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g02637 CCT 1.1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02637 - - vun:114164157 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02637 9 35362268 35367778 Viun9g02637 9 35362268 35367778 ECH