Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02615 ATGACCACTCTCCCACTCAAACCTCACAACACTTTCCACCATGACCTTTTTCTTTTCTACTGCTATTTTATTCTCCTCACGCACTTTCCGCCGCCGGCCGCCGCGCAGCTCCCCAACGCGCTCACGCCACCGCCGCCGGACATGTTCTCCAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTGGTGGCGGTGTTCTTCTTCCTCGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGAAGGATGCGAGGGAGGTTCGACCTCTCCATCTCGATCGCGCGTCGGCCACGCGGTCTGGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTCAAGATAGGACGCGCCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGAGGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCCGAGTGCATCGACGCGTGGCTCGCAAATCACTCCACTTGTCCCGTCTGTCGCGCCAACCTTGTCCCCAAACCCGACGACGACCCCTCCTTTGTTTCCATCCCAATCCCGGATCCGGTTCAGCCCGTTTTACACTCCCCGGTCCAACCCGAACCCACGGTTTCTCCTAAGCCCAATGATTTCATCAATCGCAACCGTTCACCGCGGTCAAGGTCAACGGGTTTCAGCATCGCCAGCTTGATTCCGCGATCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGAGAGAATTGCGAGCGGTTCACTCTGCGTTTGCCTGAGGAAGTGCGGAACCAGCTGATGACTTCCACGACGCTTAGTCGCACCAAGAGTTGCGGCTTGAGCCTGGGTCTCACGCGCGAGAACAGTGGGAGGAGGGGTTACAGAACCAGAAGCGTTGGTCACAGTCTTAGTCCTCACGTGACAAGAGGCATGGGTGGCACCAGTAGCAGCCCTCACGTGCGGGGACATGACAGACGGTGGTTTTTTCAGAGCCCTCCGACCAAGGACTCCATTAAGGAAGATGTCGGCGAACGTTCTTCGGATCGGCTTTTCTCGGAGACCACGAAGGATACTGATAATTAA 1092 0.5769 MTTLPLKPHNTFHHDLFLFYCYFILLTHFPPPAAAQLPNALTPPPPDMFSKLKFDKSMAIVLVILVAVFFFLGFLSVYTRQCAERRMRGRFDLSISIARRPRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEEETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDDPSFVSIPIPDPVQPVLHSPVQPEPTVSPKPNDFINRNRSPRSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLSLGLTRENSGRRGYRTRSVGHSLSPHVTRGMGGTSSSPHVRGHDRRWFFQSPPTKDSIKEDVGERSSDRLFSETTKDTDN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02615 363 MobiDBLite consensus disorder prediction 212 228 - -
Viun9g02615 363 PANTHER RING FINGER DOMAIN-CONTAINING 44 182 - -
Viun9g02615 363 Pfam Ring finger domain 131 174 IPR001841 -
Viun9g02615 363 SUPERFAMILY RING/U-box 126 182 - -
Viun9g02615 363 MobiDBLite consensus disorder prediction 340 363 - -
Viun9g02615 363 CDD RING-H2_EL5-like 131 174 - -
Viun9g02615 363 MobiDBLite consensus disorder prediction 200 228 - -
Viun9g02615 363 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Viun9g02615 363 SMART ring_2 132 173 IPR001841 -
Viun9g02615 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Viun9g02615 363 MobiDBLite consensus disorder prediction 285 363 - -
Viun9g02615 363 FunFam E3 ubiquitin-protein ligase ATL6 93 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02615 Viun-Chr9 35189789 35191453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02615 23 296 Rapid Response to Elicitors AT3G05200 44.097 1.03e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02615 K10664 - gmx:100805815 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02615 9 35189789 35191453 Viun9g02615 9 35189789 35191453 ECH
Viun8g01561 8 26039490 26040662 Viun9g02615 9 35189789 35191453 PCT