Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02614 ATGGCGCTAGAGGCTGTGGTATTTCCGCAAGATCCGTTTCCGTACGCTTGCAAGGATTATTTTTACTCCCCAGTAGGAGCAGCACCCAACTACGGTTTTCAAGCGGCGGAAGAAGAGAAACTCCTCCTAGGAATCATCAACAACAACATAGAGGACAATCTATACACAACCTGGGATTCCTCTTCTACCTCGGTCTTGCAAAATGTGAAGGAACAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCGTCGATGAATCCATGATCCCACCTCTTTCTTCCTCGGCCGAAGCCACCGCCACCGCAACAACCACCACCACTCGACGCAAACGGCGCCGTACGAAGAGCGCTAAAAACAAAGAAGAAATCGAAAACCAGAGGATGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAACGAGTACTTAGCCGTACTCCGATCCTTGATGCCCTCCTCTTACGTTCAGAGGGGTGACCAAGCTTCTATCATTGGAGGGGCCATTAACTTCGTGAAGGAGTTGGAACAGGTTTTGCAATCAATGGAAGGTGAAAAGAGAAGGAAGCAGGGCGAGGAAGAGAATGTTGGGTTGAATGGGTGGACAACACCCTTTGCCGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGCACGCAGAAGCAGGAACAGAAACAGTGGGCCGTAGCAGACATTGAGGTCACCATGGTCGATAGTCATGCCAATCTGAAGATTCTCGCGAAGAAACAACCCTCGCATCTCATCAAGATCGTTCTCGGCCTTCAAAGTCTCAGACTCACCATTCTCCACCTCAATGTCACCACTCTCCACCACATGGTTCTTTACTCCATCAGCGTCAAGGTAGAGGAGGGGTGCGAGCTGAACACGGTGGATGAAATTGCGGCGGCGGTGAATCAACTGTTAGGCACAATCCAAGATGTTGCATTCAGCTGA 957 0.5047 MALEAVVFPQDPFPYACKDYFYSPVGAAPNYGFQAAEEEKLLLGIINNNIEDNLYTTWDSSSTSVLQNVKEQWDSHSSPEACTVDESMIPPLSSSAEATATATTTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGEKRRKQGEEENVGLNGWTTPFAEFFTFPQYTTRGTQKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLIKIVLGLQSLRLTILHLNVTTLHHMVLYSISVKVEEGCELNTVDEIAAAVNQLLGTIQDVAFS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02614 318 MobiDBLite consensus disorder prediction 92 121 - -
Viun9g02614 318 SMART finulus 131 182 IPR011598 GO:0046983
Viun9g02614 318 Coils Coil 173 196 - -
Viun9g02614 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 176 IPR011598 GO:0046983
Viun9g02614 318 Pfam Helix-loop-helix DNA-binding domain 126 177 IPR011598 GO:0046983
Viun9g02614 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 191 IPR036638 GO:0046983
Viun9g02614 318 CDD bHLH_AtFAMA_like 128 194 - -
Viun9g02614 318 FunFam Basic helix-loop-helix transcription factor 116 191 - -
Viun9g02614 318 PANTHER MAX DIMERIZATION, MAD 70 314 - -
Viun9g02614 318 Gene3D - 115 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02614 Viun-Chr9 35164685 35166500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02614 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 49.000 6.12e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g02614 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02614 - - gmx:100789380 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02614 9 35164685 35166500 Viun9g02614 9 35164685 35166500 ECH
Viun8g01560 8 26023119 26025450 Viun9g02614 9 35164685 35166500 PCT