Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02612 ATGGCGCTTCTACGTGTTGTGTGCTTAACCTCTGCAAATCAGTTATCGGTTCAAACCTATTCCCATTCCCATTCCCATCCCATCGCTCTCTCTTCCCTTTCCCAATCCATCAACTTCCCCAATCGCCCTTCCTTTCACCTTCCACCCTTATCCCTTACCACAACCAAACAAACCCCTAATTTCACTCTCACATGCGTTTCCACTTCCCAACAACAACCCCAGCCAGTAACCGAAGAAGAATTTTCTCGTACAAGGTTGCTCGCTCAGAACGTCCCATGGACAAGCACCCCGGAGGATATTCGTTCTTTGTTTGAGAAACATGGAAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCTCCAGAAGAGGCTCTTGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGTCGTGTAATGAAAGTCAATTATGCTCGGCCGAAAAAGAAGAAAACGCCGCCTCCGGTGAAACCAAATCCTGGCGTGACGTTTAACTTGTTTGTTGGTAACTTGTCCTATTTAGCCAAGTCCAAGGATCTCAAGGAATTTTTTGATTCCGGAACTAATAAAGTTGTTAGAGCCGAGGTTGTATTTCTTGACAATCCTAGAAAGCCGTCAGGGTATGGATTTGTGTCATACAAGTCCAAGAAAGAAGCCGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGAATTTATGGGAAGGGCAATCAGGGTGGATCGGGGTCGTCGATTTGTTCAGAAACCAGGGGATGGGAATTCAAAGTCTGTTGTAGATACTCCTTCTGAGTTGAGTGTGAATGGGGAAGAAGCTGAACAGCCAGCAGAGGGAACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGAGGCAGAAGCTGACAAAGCTGATTGA 936 0.4583 MALLRVVCLTSANQLSVQTYSHSHSHPIALSSLSQSINFPNRPSFHLPPLSLTTTKQTPNFTLTCVSTSQQQPQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARPKKKKTPPPVKPNPGVTFNLFVGNLSYLAKSKDLKEFFDSGTNKVVRAEVVFLDNPRKPSGYGFVSYKSKKEAEAALAEFQGKEFMGRAIRVDRGRRFVQKPGDGNSKSVVDTPSELSVNGEEAEQPAEGTPNSEDTPELSVNEAEADKAD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02612 311 Gene3D - 166 270 IPR012677 -
Viun9g02612 311 MobiDBLite consensus disorder prediction 258 311 - -
Viun9g02612 311 SUPERFAMILY RNA-binding domain, RBD 68 170 IPR035979 GO:0003676
Viun9g02612 311 SMART rrm1_1 179 253 IPR000504 GO:0003723
Viun9g02612 311 SMART rrm1_1 85 157 IPR000504 GO:0003723
Viun9g02612 311 CDD RRM_SF 90 157 - -
Viun9g02612 311 Gene3D - 63 165 IPR012677 -
Viun9g02612 311 MobiDBLite consensus disorder prediction 266 280 - -
Viun9g02612 311 SUPERFAMILY RNA-binding domain, RBD 176 262 IPR035979 GO:0003676
Viun9g02612 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Viun9g02612 311 Coils Coil 300 311 - -
Viun9g02612 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Viun9g02612 311 PANTHER OS02G0815200 PROTEIN 67 254 - -
Viun9g02612 311 CDD RRM_SF 180 253 - -
Viun9g02612 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 251 IPR000504 GO:0003723
Viun9g02612 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02612 Viun-Chr9 35143223 35145290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02612 84 260 Eukaryotic Initiation Factors Gene Family AT3G16380 28.125 4.98e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02612 - - gmx:100790439 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02612 9 35143223 35145290 Viun9g02612 9 35143223 35145290 ECH