Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02593 ATGGAGTCTCGGAGAGATCGCAGGGCAGAAGCTCTTGGAGACCTTCGAGTCCTTCCCGACGAAATCCTATGTGCAATTTTGGAACGTTTCACTCCCCGAGATGTTGCTCGCGTAGCTTGTGTTAGCAGTGTGATGTACACACTATGCAACGAAGAACCTCTGTGGATGAGTCTATGCCTAAAAGAAGCGACTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTGGCCGACAAATACAAAGAATACCATAGAGGACCTTTATATTTTGATGGGTTCAACTCTTTATTCTTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCTTTTCATGCGGATACTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTACGGAGATGTAGCATTTAAAATTTCTCAACGGGGTGCCCGAAAGATCTCCATGAAGTTCAAGGATTATGTCTCGTACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGATGTCTTAGACACAGATAAAAGACCATCCTATAGGTGGCTCATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTTCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAAGACAAGCCATTTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTGACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATGGTTATGAAAATGTCAGACAGAACATGCCATGTAATGAAAAGAACTCAAGTTACAACGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGCAGATGGTCTATTTAATAAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCCTGTGGAGCTCAGGGAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAACTTAAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGTTAGAATTCCTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACCGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACACTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAAAGCCGGTTGCATGAAGCCAACTCCCCGCTTAGTAAACATATACCTGATGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTGTACCAATTTAAGTTGGGATGGAAAAGGTGTACCTGATATCATTGTGAAAAACAATATCACCAGTAGGAAATGCAATGTTGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAGTTTGAGTATAAGAATGCTGGGATGCCTGTGGATGAATCAGGTAGCTTAGCTGGTAACTCATACATATGGCCATATGTGATAACAAAACGTTGTGCAGGGAATATGTTTGCAGATCTAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGGGAGCAACTGCATTATCTTCACCTGTTGTCATATCCGCCTCCAAATATCTCATCTTTCTCTGATATTGATCATGAATTAAGCTTGGTTGAGGCCAATGGTTGCATTGCTACTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGAACCTTAGCAAAGATGAGGAAAGATGTGTCAACCCGTTTGACCAAGTGGGGTGATCCAATTCCTATCAAACTCATTGAGAAGATTGATGAATATATTCCACCCGATTTTGCTGAGAAGTTTGGAAACTATGCTTGTAAACCTTGCTCCTGGATACACACGGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCGCTGCTGCGAATAATGAAGATAGCACCATGCTGGACAATGTTTTGTTGAGTAATTATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGCGATCTTTCAATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGTTCGTGAGGTATCAAGGTGGGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCGGCACAGTCATGGGAAGAAGTTGAGGTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2886 0.4103 MESRRDRRAEALGDLRVLPDEILCAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKEATGLLQYKGSWKKTVLHNLNLADKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFHADTGNVERIKDISLKDFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDVLDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPFECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDGYENVRQNMPCNEKNSSYNDLSRKEKRAKTQKDADGLFNKRAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPNLRELIWKGACIALNANKWLEFLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNTVVKIFVEGGLEASLYGLGTELEFQSRLHEANSPLSKHIPDVLASGIIYLENGSCTNLSWDGKGVPDIIVKNNITSRKCNVDDFSFGVWGRKQFEYKNAGMPVDESGSLAGNSYIWPYVITKRCAGNMFADLDKLTWEDTTNLASFLGEQLHYLHLLSYPPPNISSFSDIDHELSLVEANGCIATVNSKSNVTAEWWLFTRTLAKMRKDVSTRLTKWGDPIPIKLIEKIDEYIPPDFAEKFGNYACKPCSWIHTDIMDDNIYMKPSLVCSTAAANNEDSTMLDNVLLSNYEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVREVSRWESTEGDQKFGRLSYLAMCYCILHDDNVLGALFSIWEELRSAQSWEEVEVAVWGELNNYKGFP 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02593 961 Gene3D Cupin 111 363 - -
Viun9g02593 961 Pfam F-box-like 17 61 IPR001810 GO:0005515
Viun9g02593 961 SUPERFAMILY Clavaminate synthase-like 118 370 - -
Viun9g02593 961 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Viun9g02593 961 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Viun9g02593 961 SMART cupin_9 210 373 IPR003347 -
Viun9g02593 961 Pfam Cupin-like domain 143 365 IPR041667 -
Viun9g02593 961 FunFam F-box protein At1g78280 106 363 - -
Viun9g02593 961 Gene3D - 7 89 - -
Viun9g02593 961 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 585 - -
Viun9g02593 961 SUPERFAMILY F-box domain 6 74 IPR036047 GO:0005515
Viun9g02593 961 SUPERFAMILY Protein kinase-like (PK-like) 667 894 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02593 Viun-Chr9 35025914 35036229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02593 4 957 Glycosyltransferase AT1G78280 60.453 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g02593 Cupin_8 5.7e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02593 - - gmx:100792541 1764.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02593 9 35025914 35036229 Viun9g02593 9 35025914 35036229 ECH