Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02592 ATGGAGTCTCGGAGAGATCGCAGGGCAGAAGCTCTTGGAGACCTTCGAGTCCTTCCCGACGAAATCCTATGTGCAATTTTGGAACGTTTCACTCCCCGAGATGTTGCTCGCGTAGCTTGTGTTAGCAGTGTGATGTACACACTATGCAACGAAGAACCTCTGTGGATGAGTCTATGCCTAAAAGAAGCGACTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTGGCCGACAAATACAAAGAATACCATAGAGGACCTTTATATTTTGATGGGTTCAACTCTTTATTCTTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCTTTTCATGCGGATACTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTACGGAGATGTAGCATTTAAAATTTCTCAACGGGGTGCCCGAAAGATCTCCATGAAGTTCAAGGATTATGTCTCGTACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGATGTCTTAGACACAGATAAAAGACCATCCTATAGGTGGCTCATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTTCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAAGACAAGCCATTTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTGACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATGGTTATGAAAATGTCAGACAGAACATGCCATGTAATGAAAAGAACTCAAGTTACAACGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGCAGATGGTCTATTTAATAAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCCTGTGGAGCTCAGGGAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAACTTAAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGTTAGAATTCCTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACCGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACACTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAAAGCCGGTTGCATGAAGCCAACTCCCCGCTTAGTAAACATATACCTGATGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTGTACCAATTTAAGTTGGGATGGAAAAGGTGTACCTGATATCATTGTGAAAAACAATATCACCAGTAGGAAATGCAATGTTGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAGTTTGAGTATAAGAATGCTGGGATGCCTGTGGATGAATCAGGTAGCTTAGCTGGTAACTCATACATATGGCCATATGTGATAACAAAACGTTGTGCAGGGAATATGTTTGCAGATCTAAGAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGGGAGCAACTGCATTATCTTCACCTGTTGTCATATCCGCCTCCAAATATCTCATCTTTCTCTGATATTGATCATGAATTAAGCTTGGTTGAGGCCAATGGTTGCATTGCTACTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGAACCTTAGCAAAGATGAGGAAAGATGTGTCAACCCGTTTGACCAAGTGGGGTGATCCAATTCCTATCAAACTCATTGAGAAGATTGATGAATATATTCCACCCGATTTTGCTGAGAAGTTTGGAAACTATGCTTGTAAACCTTGCTCCTGGATACACACGGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCGCTGCTGCGAATAATGAAGATAGCACCATGCTGGACAATGTTTTGTTGAGTAATTATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGCGATCTTTCAATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGTTCGTGAGGTATCAAGGTGGGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCGGCACAGTCATGGGAAGAAGTTGAGGTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2889 0.4102 MESRRDRRAEALGDLRVLPDEILCAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKEATGLLQYKGSWKKTVLHNLNLADKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFHADTGNVERIKDISLKDFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDVLDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPFECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDGYENVRQNMPCNEKNSSYNDLSRKEKRAKTQKDADGLFNKRAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPNLRELIWKGACIALNANKWLEFLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNTVVKIFVEGGLEASLYGLGTELEFQSRLHEANSPLSKHIPDVLASGIIYLENGSCTNLSWDGKGVPDIIVKNNITSRKCNVDDFSFGVWGRKQFEYKNAGMPVDESGSLAGNSYIWPYVITKRCAGNMFADLRDKLTWEDTTNLASFLGEQLHYLHLLSYPPPNISSFSDIDHELSLVEANGCIATVNSKSNVTAEWWLFTRTLAKMRKDVSTRLTKWGDPIPIKLIEKIDEYIPPDFAEKFGNYACKPCSWIHTDIMDDNIYMKPSLVCSTAAANNEDSTMLDNVLLSNYEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVREVSRWESTEGDQKFGRLSYLAMCYCILHDDNVLGALFSIWEELRSAQSWEEVEVAVWGELNNYKGFP 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02592 962 Gene3D Cupin 111 363 - -
Viun9g02592 962 Pfam F-box-like 17 61 IPR001810 GO:0005515
Viun9g02592 962 SUPERFAMILY Clavaminate synthase-like 118 370 - -
Viun9g02592 962 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Viun9g02592 962 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Viun9g02592 962 SMART cupin_9 210 373 IPR003347 -
Viun9g02592 962 Pfam Cupin-like domain 143 365 IPR041667 -
Viun9g02592 962 FunFam F-box protein At1g78280 106 363 - -
Viun9g02592 962 SUPERFAMILY Protein kinase-like (PK-like) 667 895 IPR011009 -
Viun9g02592 962 Gene3D - 7 89 - -
Viun9g02592 962 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 585 - -
Viun9g02592 962 SUPERFAMILY F-box domain 6 74 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02592 Viun-Chr9 35025914 35036229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02592 4 958 Glycosyltransferase AT1G78280 60.556 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g02592 Cupin_8 5.7e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02592 - - gmx:100792541 1771.52