Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02585 ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTCTCTGGAAGCCATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACTACCTTCACCAAACTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGGAGGACTCGACCTTCACCACCTCGAGGGAGGAGTATAGTTCAAGGTGGAGGAGGAACAGTACAGAGTGTTCCGGGATCCGGACCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGATTATGGATACCACCACCAAGCGACGTTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAAGTCTATGGAGCATCATCTTCAACAATGAGCACCCCGTATTACTATGGCTACTCTTTGCAAGCACCAAGAAACACATTCTCTTCACCCCAGGCAAATCGCCTATCACCTGGACCATCTTATCTGTACTATCCTACACCCATGGAAGTCTCATTCTCTGCATATCGCCCACTACAATCACCAATCACCCAAAACTTTCCTTCTCCAACTGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTGA 852 0.4859 MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRSIVQGGGGTVQSVPGSGPPPSLPPAPAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSLQAPRNTFSSPQANRLSPGPSYLYYPTPMEVSFSAYRPLQSPITQNFPSPTDSQSQQRISSETAATSESSNTQGKN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02585 283 MobiDBLite consensus disorder prediction 248 283 - -
Viun9g02585 283 MobiDBLite consensus disorder prediction 114 146 - -
Viun9g02585 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Viun9g02585 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Viun9g02585 283 Gene3D - 5 134 IPR012677 -
Viun9g02585 283 SMART rrm1_1 39 111 IPR000504 GO:0003723
Viun9g02585 283 CDD RRM_RBM24_RBM38_like 38 113 - -
Viun9g02585 283 PANTHER BOULE-RELATED 16 264 - -
Viun9g02585 283 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
Viun9g02585 283 SUPERFAMILY RNA-binding domain, RBD 21 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02585 Viun-Chr9 34977696 34981904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02585 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 5.51e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02585 K25006 - gmx:100811977 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02585 9 34977696 34981904 Viun9g02585 9 34977696 34981904 ECH
Viun8g01500 8 24947753 24953235 Viun9g02585 9 34977696 34981904 PCT