Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02573 ATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTGGTTCAGCACATTGAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTAGCCGGTCTGAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGGCCTGATATCAAGAGGGGAAAGTTTTCTCAAGAAGAGGAGCAAACAATTCTTCATCTCCATTCTATTCTTGGAAACAAATGGTCAGCAATTGCGACCCACCTTCCTGGCAGGACGGATAATGAGATAAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCCAGAACTGACCTTGTTTCCAGCTTGCCCTATGTGCTAGCTTTGGCCAGCATGACAGACCTCATGGATCATCAGACCTTGGATGAACATGCTATGATGTTGCAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCCCCAACCACTACGACCAAAATGCCACCACAAACAACATGGAACCTCTCACTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATCCGGTGATGTTGCAACCAGATGCTCCTGCCTCATTTTCACATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCACCTTATAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGCAATGGTAAGTCAAGGGGATCACACGGTTGATCATGACTCTTCCTGGATTATTCCCTCTATTCCTCCCAATGCAATAGCTACATCAGCTAACAATCCCGGAGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCCAATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATCATGCATGACCTATCTTAG 999 0.4505 MGRSPCCDENGLKKGPWTPEEDQKLVQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYVLALASMTDLMDHQTLDEHAMMLQAEAVQLAKLQYLHYLIQSSNSLSPNHYDQNATTNNMEPLTLLNSISNVKENPVMLQPDAPASFSHGIASSQPLHHPNVLPHLIDPQVSFSSQSCLNSEMGQGTNFAMVSQGDHTVDHDSSWIIPSIPPNAIATSANNPGDASSSTSSYGGGPQSYWPELFFEDPIMHDLS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02573 332 CDD SANT 69 112 IPR001005 -
Viun9g02573 332 CDD SANT 16 61 IPR001005 -
Viun9g02573 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Viun9g02573 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun9g02573 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun9g02573 332 Gene3D - 69 116 - -
Viun9g02573 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun9g02573 332 MobiDBLite consensus disorder prediction 293 312 - -
Viun9g02573 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun9g02573 332 SMART sant 13 63 IPR001005 -
Viun9g02573 332 SMART sant 66 114 IPR001005 -
Viun9g02573 332 FunFam MYB-related transcription factor 13 66 - -
Viun9g02573 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun9g02573 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun9g02573 332 FunFam Transcription factor MYB39 69 130 - -
Viun9g02573 332 Gene3D - 11 67 - -
Viun9g02573 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02573 Viun-Chr9 34864974 34866516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02573 1 332 MYB Transcription Factor Family AT1G34670 55.676 9.83e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g02573 Myb_DNA-binding 6.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02573 K09422 - gmx:100782792 610.142