Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02557 ATGGCTGTGCTTAGCGGGTTTTGGGGGCTGCCCCATAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTGGTGCTTGGATTGATTCAATGAGAGCCTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTCTTTATCACCCTTCAGCTCTCAATACCTTTGAGCAAATAACATATAATTCCAAAGGCAAGCAGGTCGTAGTTTTTCTTGACTACGATGGAACACTCTCCCCTATCGTTACAGATCCGGACAAAGCTTTCATGAGTCGAAAGATGAGAGCGACGCTGAAGGGAATCGCAAGACATTTTCCCACAGCAATCGTGACCGGGAGGTGCAGGGACAAGGTCTATAACTTTGTGAAACTGGCAGAACTCTACTATGCCGGGAGCCATGGCATGGACATCAAGGGGCCAACAAAAATCCGAAGTCCAAAGCAAGGTAATAATAAAGCAGTACTGTTCCAACCCGCGAGTCAATTCCTGCCTATGATCGATGAGGTGTACAAGGTGTTGTTAGAGAAGACAAAGTCTGTCCCAGGGGCTAAGGTCGAGAACAACAAGTTTTGCTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGAGCTGGGCACCCCTGGCGGAGAAAGTTAGATTGGTGCTCACTGAGTACCCACAACTTAAGCTAACCCAAGGCAGAAAAGTGCTGGAGATTCGTCCAACCATCAAATGGGACAAGGGAAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAGTGATGTATTTCCAATCTATATTGGTGATGATCGAACAGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATACTTGTTTCCAGAGTTGCAAAAGAAACAGATGCTTCCTATAGCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGAGATTGGTGGAATGGAAAAGATCCAGTAGTGTTAAGTGCACAGAGTTGTAG 999 0.4515 MAVLSGFWGLPHKNLVKRLEGAKVGAWIDSMRASSPTRAKSESQEKRSWILYHPSALNTFEQITYNSKGKQVVVFLDYDGTLSPIVTDPDKAFMSRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKIRSPKQGNNKAVLFQPASQFLPMIDEVYKVLLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLTEYPQLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSSDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYSLQDPSEVEQFLRRLVEWKRSSSVKCTEL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02557 332 NCBIfam trehalose-phosphatase 69 319 IPR003337 GO:0003824|GO:0005992
Viun9g02557 332 FunFam Trehalose 6-phosphate phosphatase 163 239 - -
Viun9g02557 332 CDD HAD_TPP 73 311 - -
Viun9g02557 332 FunFam Trehalose 6-phosphate phosphatase 72 159 - -
Viun9g02557 332 Gene3D - 72 167 IPR023214 -
Viun9g02557 332 Gene3D - 189 330 IPR023214 -
Viun9g02557 332 NCBIfam HAD-IIB family hydrolase 74 283 IPR006379 -
Viun9g02557 332 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 327 IPR044651 GO:0004805|GO:0005992
Viun9g02557 332 FunFam Trehalose 6-phosphate phosphatase 169 328 - -
Viun9g02557 332 Pfam Trehalose-phosphatase 75 309 IPR003337 GO:0003824|GO:0005992
Viun9g02557 332 SUPERFAMILY HAD-like 73 321 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02557 Viun-Chr9 34664870 34667469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02557 10 318 Trehalose Biosynthesis Gene Families AT1G70290 25.369 1.77e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02557 K01087 - gmx:100788641 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02557 9 34664870 34667469 Viun9g02557 9 34664870 34667469 ECH
Viun8g01465 8 23980453 23983843 Viun9g02557 9 34664870 34667469 PCT