Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02555 ATGGCAGCCATGATGGGTTTTTACAGCAGCACCGAGTTTCAACTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCTTCCTTTTCTTCTTCACCCCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCCTCACCCTCCTTCCCTATTATGTACTCAAACAACTGCTCCGCATCGATGACCCATGCTTTTGCCGACGGGTTATCCCAATCCAACACCCAAAACATCATAGGCTTCGCGCAAGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGACTCAAATCCAGATCCAGAGCCAGCACCACCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTCAAGCCCACGAAGCTCTACCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACCAGGCTCTGGCTCGGGACATTCGATACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCCAACCTCCGCCACCAGGGTTCCTCGGTGGGCGGAGGGTTTGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCCAAGCTTCAGGCCATATGTGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCGCGATCCAAAGTGGCTCCTCCGGCAGAGAAGGCTGATTCTGACAAGGTTTCGGACGACAAGACCATCAACAACTGCTGCAAGGTGGAAGCTTCGTCGTCTCCTGTTACGACTGAGAGCGAGAGTTCCGAAGGTTCTTCGCCTCTGTCGGATCTGACGTTTGCTGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCGGATACTTTTAATCTCCACAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1047 0.5463 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPPSTSYSPSPIYFPSSPSFPIMYSNNCSASMTHAFADGLSQSNTQNIIGFAQGQPTSLLGLNHLTPSQISQIQTQIQIQSQHHQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPAEKADSDKVSDDKTINNCCKVEASSSPVTTESESSEGSSPLSDLTFADVSEPQWEGDSDTFNLHKYPSYEIDWDSL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02555 348 CDD AP2 154 214 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 MobiDBLite consensus disorder prediction 289 318 - -
Viun9g02555 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 348 - -
Viun9g02555 348 MobiDBLite consensus disorder prediction 250 333 - -
Viun9g02555 348 FunFam Ethylene-responsive transcription factor 2 154 213 - -
Viun9g02555 348 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Viun9g02555 348 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Viun9g02555 348 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Viun9g02555 348 MobiDBLite consensus disorder prediction 257 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02555 Viun-Chr9 34633457 34635327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02555 1 348 AP2-EREBP Transcription Factor Family AT1G78080 53.050 1.31e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g02555 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02555 K09286 - gmx:100800478 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02555 9 34633457 34635327 Viun9g02555 9 34633457 34635327 ECH
Viun8g01463 8 23887714 23889573 Viun9g02555 9 34633457 34635327 PCT