Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02498 ATGCCACGGCAATCGCCACCGTCACAGCCGCAGCATCCCGGCAAACTGGAGCCGGCGATATGGCAAGCCTGTGCCGGACCGTCTGTGGAAATCCCGAAGCCCAATTCTATGGTTTACTACTTCCCTCAGGGACACTTTGATCAAGCCTCTTCGGCACCGCGGAATCTCTCCACTCACCTTCTGGCCAAACCCTTCATTACCTGCAGTGTCGTCTCGGTTGATTTTCTTGCCGATCCTCTTACCGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAATAACTTTCCAGCGGAATCATTCCATACTCCTGCTGCTCCTCCGCCAAATGACGACAAAGACAACGATGTCGTTTCTTTCGCCAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCGGTGCCCAGGTTCTGTGCGGACTCCGTCTTTCCGAAGCTGAATTTCGGGGCAGACCCGCCTGTGCAGAACCTCTCTGTCACCGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTACCGTGGGACGCCACGCCGCCACTTGCTCACCACCGGCTGGAGCACGTTTGTCAACAACAAGAAGCTGGTCGCCGGAGACTCTGTCTTGTTTATGAAGAGTGCTGCAGGACGTCTGTTCGTCGGAATTCGCCGCACCATACGCTCCTTTCCTGAAAGGGGCAACTGCGTGAAGCTCAGGTTAATTGAGGAGGAGGATAAAGAAGAGGAGGAGGAAGAAGATGAGGAGAAGGAGAAGAGGGTTTTCAAGAGGGACGGGAAGGGGAAGCTGTCGGCTAAGGTTGTTGCGGAGGCGGCAGAGTTGGCCGCGCGGAACATGCCGTTTGAGGTTGTTTATTACCCGAAGGCTGGTTGGTCTGAGTTCGTGGTGAAGACTGAGGTGGTGGATGCAGCGATGAGGATTGCATGGAGCGATGGGATGAGAGTGAAGATGTCTGTGGAGACAGACGATTCGTCCAGGATGACGTGGTTTCAGGGTACTGTCTCTGCTGTCTCATTTCAGGATAATGGCCAATGGTGCGGTTCGCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGTTGCGGAATGCAAAATGGGTTAGTCCTTGGCAAGTGGAGCTTGTTTCCCCCACACCTGTCCTTCATCCGGCCTTCCCCTCACCAAAAAGGCTTAGAACTGCTGATGGTTATGGGGTGTTGACCAATGGAGAGGGAGGAACCTTTTCTGTGGCCAGAGTCACTAATTCAGCAATGGTACACCTGAATCAGGCATTGTTGGGTTATAGTCATTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTCCCAATTATCCAAGGGACATGTCTCATCCGTGTATCATAAATTCCTTTGGGAACAACACATTTTCAAGGCTGAAAAATTTGCCGACAGAACCACATGTTGGCGGCAACTCTCAATCTGATGAACTATCACCAGACAGTAGTTTCCATTCCTGTGTCACAGACACTCTTGAGAATCGCAACAACTCAATAAAACCTGCGCCGGATTCATTTCAGCTATTTGGTGCAGTCATTCGGAAAGAACAACCTGTACAAAATGGTTTAACAGACACTGGTTGTCCTATCACAGGAGATAAAGTCCTTGACAGATGA 1668 0.5162 MPRQSPPSQPQHPGKLEPAIWQACAGPSVEIPKPNSMVYYFPQGHFDQASSAPRNLSTHLLAKPFITCSVVSVDFLADPLTDEVFTKMVLQPVGNNFPAESFHTPAAPPPNDDKDNDVVSFAKILTPSDANNGGGFSVPRFCADSVFPKLNFGADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKSAAGRLFVGIRRTIRSFPERGNCVKLRLIEEEDKEEEEEEDEEKEKRVFKRDGKGKLSAKVVAEAAELAARNMPFEVVYYPKAGWSEFVVKTEVVDAAMRIAWSDGMRVKMSVETDDSSRMTWFQGTVSAVSFQDNGQWCGSPWRMLQVTWDEPEGLRNAKWVSPWQVELVSPTPVLHPAFPSPKRLRTADGYGVLTNGEGGTFSVARVTNSAMVHLNQALLGYSHFPAGMQGARHDVFSASSFPNYPRDMSHPCIINSFGNNTFSRLKNLPTEPHVGGNSQSDELSPDSSFHSCVTDTLENRNNSIKPAPDSFQLFGAVIRKEQPVQNGLTDTGCPITGDKVLDR 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02498 555 FunFam Auxin response factor 119 223 - -
Viun9g02498 555 MobiDBLite consensus disorder prediction 482 502 - -
Viun9g02498 555 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun9g02498 555 Gene3D - 118 223 IPR015300 -
Viun9g02498 555 SMART B3_2 121 223 IPR003340 GO:0003677
Viun9g02498 555 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Viun9g02498 555 SUPERFAMILY DNA-binding pseudobarrel domain 115 231 IPR015300 -
Viun9g02498 555 Coils Coil 234 261 - -
Viun9g02498 555 CDD B3_DNA 120 221 IPR003340 GO:0003677
Viun9g02498 555 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 534 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun9g02498 555 Gene3D - 312 383 - -
Viun9g02498 555 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02498 Viun-Chr9 34103458 34107551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02498 15 551 B3 DNA Binding Superfamily AT1G77850 46.168 6.55e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun9g02498 B3 9.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02498 - - gmx:102662128 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02498 9 34103458 34107551 Viun9g02498 9 34103458 34107551 ECH
Viun8g01405 8 22233120 22237346 Viun9g02498 9 34103458 34107551 PCT