Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02497 ATGCCACGGCAATCGCCACCGTCACAGCCGCAGCATCCCGGCAAACTGGAGCCGGCGATATGGCAAGCCTGTGCCGGACCGTCTGTGGAAATCCCGAAGCCCAATTCTATGGTTTACTACTTCCCTCAGGGACACTTTGATCAAGCCTCTTCGGCACCGCGGAATCTCTCCACTCACCTTCTGGCCAAACCCTTCATTACCTGCAGTGTCGTCTCGGTTGATTTTCTTGCCGATCCTCTTACCGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAATAACTTTCCAGCGGAATCATTCCATACTCCTGCTGCTCCTCCGCCAAATGACGACAAAGACAACGATGTCGTTTCTTTCGCCAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCGGTGCCCAGGTTCTGTGCGGACTCCGTCTTTCCGAAGCTGAATTTCGGGGCAGACCCGCCTGTGCAGAACCTCTCTGTCACCGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTACCGTGGGACGCCACGCCGCCACTTGCTCACCACCGGCTGGAGCACGTTTGTCAACAACAAGAAGCTGGTCGCCGGAGACTCTGTCTTGTTTATGAAGAGTGCTGCAGGACGTCTGTTCGTCGGAATTCGCCGCACCATACGCTCCTTTCCTGAAAGGGGCAACTGCGTGAAGCTCAGGTTAATTGAGGAGGAGGATAAAGAAGAGGAGGAGGAAGAAGATGAGGAGAAGGAGAAGAGGGTTTTCAAGAGGGACGGGAAGGGGAAGCTGTCGGCTAAGGTTGTTGCGGAGGCGGCAGAGTTGGCCGCGCGGAACATGCCGTTTGAGGTTGTTTATTACCCGAAGGCTGGTTGGTCTGAGTTCGTGGTGAAGACTGAGGTGGTGGATGCAGCGATGAGGATTGCATGGAGCGATGGGATGAGAGTGAAGATGTCTGTGGAGACAGACGATTCGTCCAGGATGACGTGGTTTCAGGGTACTGTCTCTGCTGTCTCATTTCAGGATAATGGCCAATGGTGCGGTTCGCCTTGGCGCATGCTTCAGAACTGTACTTTACTCAACAAGAAACTGATATTGAAAGGTTACATGGGATGA 1122 0.541 MPRQSPPSQPQHPGKLEPAIWQACAGPSVEIPKPNSMVYYFPQGHFDQASSAPRNLSTHLLAKPFITCSVVSVDFLADPLTDEVFTKMVLQPVGNNFPAESFHTPAAPPPNDDKDNDVVSFAKILTPSDANNGGGFSVPRFCADSVFPKLNFGADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKSAAGRLFVGIRRTIRSFPERGNCVKLRLIEEEDKEEEEEEDEEKEKRVFKRDGKGKLSAKVVAEAAELAARNMPFEVVYYPKAGWSEFVVKTEVVDAAMRIAWSDGMRVKMSVETDDSSRMTWFQGTVSAVSFQDNGQWCGSPWRMLQNCTLLNKKLILKGYMG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02497 373 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Viun9g02497 373 Gene3D - 118 223 IPR015300 -
Viun9g02497 373 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun9g02497 373 SMART B3_2 121 223 IPR003340 GO:0003677
Viun9g02497 373 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 357 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun9g02497 373 FunFam Auxin response factor 119 223 - -
Viun9g02497 373 Coils Coil 234 261 - -
Viun9g02497 373 CDD B3_DNA 120 221 IPR003340 GO:0003677
Viun9g02497 373 SUPERFAMILY DNA-binding pseudobarrel domain 115 231 IPR015300 -
Viun9g02497 373 Gene3D - 312 359 - -
Viun9g02497 373 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02497 Viun-Chr9 34103454 34106069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02497 15 357 B3 DNA Binding Superfamily AT1G77850 52.601 8.12e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun9g02497 B3 4.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02497 - - gmx:102662128 455.677