Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02490 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGGACGATGTCTTCCGTTGAAGGACATGGCAGAGGAAGGGGATGCCGCTGCCGTGGGGAGACCCTGTCGGTCTGACTTTGTGGCGGAAATGACTTGTGATTCTTCTGTACGTGAAATTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTCTCAGAACGTTCCCCCTTTGATGCTGCTGAAGAAACTTCGACTTCTGCTGCGCTCACACTGCCCAGTGGGTTGGCTGGCCTGCTGAATAGGCAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGGCACAAGAGGAAATCGTCGACTAGGGCAAACCAGAAGAAGCCCGAGGATTCTAACATTTGGGTTGAGACTGAGGAGTACTTTAGAGACTTAACCTTGGCAGATATTGACTTCTTGTTTGAGTTCTCTCGCACTTCTAGTTTAGCTTTTCAGGACTATTTCTCCATTCCGCTGTTGGGAGATGTTCCGACAGACAATGTAGTTAGTAGTTATAGAGAGAATGAAATGGAGCCTGCTCCAAAAGTCAACCTAGGAGTGAGTAGTGAGGAAGAAAAAAAGGGTGATTTAGTGGGTAGTGAGGATCAAAAAAAGGGTGAATTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGATAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGCTGTTGAACAACCATGTCCTCAGGATGACAGGAATCAAGACAGTTCTGGTTCTTCTATCAGTTTAGAGTGGTTTTTGGGATGTAGGAATAAACTTTCTTTAGCTTCTGAGCGTCCCACCAAGAAAAGGAGGCTTTTGGGCGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAGCCGTTTTGCCATTATTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCGGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGTGTGCATGATGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCACTGAATCCTTGTGTTCTTTGTCCAAAGAAAGGTGGTGCATTAAAACCAGTTTGTAGCAGTGTGAAAGGTGCTGACTCAGCTGCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAAGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTTTCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTCTCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCAGATGGAGGATTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGTTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGAGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAACGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAAGCCATGTATATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATTTGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTGCACATGTGCAGAGTAGGACAGCCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACGGAAACGAAATTACTCAAGTCCGAGGATATTTTTCAAGAAGTTCAAGAGAATGCAGATAAACCTCACAAATCCTGCTTATCTGGAAAGGGTGCTGTCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATCAGGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGCGGCTGCTCAAATAGCCAAAATCAGAACTTAACTGGCAGTGAAATATCAAAGCCTGATGAAGTAAAGAGGGAGCAATTGGTCAGGACTAAAGAAGTGGAACTTTTGGAAATTTCTCCACAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGACGGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCGGAGAAATATTCGGATTTCTGCATGCCAGCTTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCCATCTTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTACCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCCTCTAGAAGCTCTGGGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTGGTGTAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGACGGTCAATGGGTTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACTTTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTCTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAAAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCACCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCGCAGAGCAAATATAACCACAAGATCCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCCATGAAGAATTCAATGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGCATGACAGATAG 4305 0.4334 MLRFLCTLLLPAMTGGRCLPLKDMAEEGDAAAVGRPCRSDFVAEMTCDSSVREIEIDYLSQARKALSERSPFDAAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSTRANQKKPEDSNIWVETEEYFRDLTLADIDFLFEFSRTSSLAFQDYFSIPLLGDVPTDNVVSSYRENEMEPAPKVNLGVSSEEEKKGDLVGSEDQKKGELVGSEDAKKVGEAVDSEDGLLVIEAIDDAAVEQPCPQDDRNQDSSGSSISLEWFLGCRNKLSLASERPTKKRRLLGVEAGLEKVIMTCPCDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHDGVDEAWLCSWCKQMGDVDESLNPCVLCPKKGGALKPVCSSVKGADSAAFVHLFCSLWMPEVYVDDLEKMEPVMNVGEVKETKKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNEFSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPDCRLSDHMLGCVAVPQQNVEVVERENENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKSHVYTSAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQPNCENPTSSNEASIPNATETKLLKSEDIFQEVQENADKPHKSCLSGKGAVSSYIHPFINKKLLQIQDGVPLENVISGSTDKGNSGLVESFGASGCSNSQNQNLTGSEISKPDEVKREQLVRTKEVELLEISPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPASDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPYIGVECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFRRGQIDAVEGMESVPKGVDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKHRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDMHDR 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02490 1434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 491 IPR013083 -
Viun9g02490 1434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1096 1207 IPR013083 -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 822 846 - -
Viun9g02490 1434 ProSiteProfiles Extended PHD (ePHD) domain profile. 368 489 IPR034732 -
Viun9g02490 1434 Coils Coil 926 946 - -
Viun9g02490 1434 ProSiteProfiles Zinc finger PHD-type profile. 1029 1078 IPR019787 -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 1284 1315 - -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 822 844 - -
Viun9g02490 1434 SUPERFAMILY FYVE/PHD zinc finger 1023 1076 IPR011011 -
Viun9g02490 1434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1021 1081 IPR013083 -
Viun9g02490 1434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 363 IPR013083 -
Viun9g02490 1434 ProSiteProfiles Zinc finger PHD-type profile. 310 361 IPR019787 -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 101 119 - -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 543 557 - -
Viun9g02490 1434 Pfam PHD-finger 326 359 - -
Viun9g02490 1434 Pfam PHD-finger 1043 1076 - -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 531 557 - -
Viun9g02490 1434 PANTHER PHD FINGER PROTEINS 106 962 - -
Viun9g02490 1434 CDD ePHD 1100 1205 - -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 197 219 - -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 1284 1314 - -
Viun9g02490 1434 Pfam PHD-zinc-finger like domain 370 488 - -
Viun9g02490 1434 Pfam PHD-zinc-finger like domain 1098 1205 - -
Viun9g02490 1434 SUPERFAMILY FYVE/PHD zinc finger 302 359 IPR011011 -
Viun9g02490 1434 ProSiteProfiles Extended PHD (ePHD) domain profile. 1097 1206 IPR034732 -
Viun9g02490 1434 MobiDBLite consensus disorder prediction 93 128 - -
Viun9g02490 1434 SMART PHD_3 1152 1206 IPR001965 -
Viun9g02490 1434 SMART PHD_3 312 359 IPR001965 -
Viun9g02490 1434 SMART PHD_3 433 489 IPR001965 -
Viun9g02490 1434 SMART PHD_3 1031 1076 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02490 Viun-Chr9 34047110 34059649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02490 307 495 C2H2 Transcription Factor Family AT3G14740 29.688 1.72e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g02490 zf-HC5HC2H_2 4.7e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02490 - - vum:124846061 2668.26