Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02489 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGGACGATGTCTTCCGTTGAAGGACATGGCAGAGGAAGGGGATGCCGCTGCCGTGGGGAGACCCTGTCGGTCTGACTTTGTGGCGGAAATGACTTGTGATTCTTCTGTACGTGAAATTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTCTCAGAACGTTCCCCCTTTGATGCTGCTGAAGAAACTTCGACTTCTGCTGCGCTCACACTGCCCAGTGGGTTGGCTGGCCTGCTGAATAGGCAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGGCACAAGAGGAAATCGTCGACTAGGGCAAACCAGAAGAAGCCCGAGGATTCTAACATTTGGGTTGAGACTGAGGAGTACTTTAGAGACTTAACCTTGGCAGATATTGACTTCTTGTTTGAGTTCTCTCGCACTTCTAGTTTAGCTTTTCAGGACTATTTCTCCATTCCGCTGTTGGGAGATGTTCCGACAGACAATGTAGTTAGTAGTTATAGAGAGAATGAAATGGAGCCTGCTCCAAAAGTCAACCTAGGAGTGAGTAGTGAGGAAGAAAAAAAGGGTGATTTAGTGGGTAGTGAGGATCAAAAAAAGGGTGAATTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGATAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGCTGTTGAACAACCATGTCCTCAGGATGACAGGAATCAAGACAGTTCTGGTTCTTCTATCAGTTTAGAGTGGTTTTTGGGATGTAGGAATAAACTTTCTTTAGCTTCTGAGCGTCCCACCAAGAAAAGGAGGCTTTTGGGCGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAGCCGTTTTGCCATTATTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCGGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGTGTGCATGATGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCACTGAATCCTTGTGTTCTTTGTCCAAAGAAAGGTGGTGCATTAAAACCAGTTTGTAGCAGTGTGAAAGGTGCTGACTCAGCTGCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAAGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTTTCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTCTCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCAGATGGAGGATTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGTTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGAGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAACGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAAGCCATGTATATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATTTGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTGCACATGTGCAGAGTAGGACAGCCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACGGAAACGAAATTACTCAAGTCCGAGGATATTTTTCAAGAAGTTCAAGAGAATGCAGATAAACCTCACAAATCCTGCTTATCTGGGTACGTTTCAAAAGACAAGTGTAGTATTCGTTTGCAAAATCCTTCTACGCTTTCATATCAGCAATGTCTTGTTCATTCTGCTTCAGAACCATCTGATTCTGGTTTCATAAAGGGTGCTGTCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGCGGCTGCTCAAATAGCCAAAATCAGAACTTAACTGGCAGTGAAATATCAAAGCCTGATGAAGTAAAGAGGGAGCAATTGGTCAGGACTAAAGAAGTGGAACTTTTGGAAATTTCTCCACAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGACGGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCGGAGAAATATTCGGATTTCTGCATGCCAGCTTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCCATCTTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTACCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCCTCTAGAAGCTCTGGGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTGGTGTAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGACGGTCAATGGGTTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACTTTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTCTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAAAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCACCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCGCAGAGCAAATATAACCACAAGATCCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCCATGAAGAATTCAATGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGCATGACAGATAG 4410 0.4317 MLRFLCTLLLPAMTGGRCLPLKDMAEEGDAAAVGRPCRSDFVAEMTCDSSVREIEIDYLSQARKALSERSPFDAAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSTRANQKKPEDSNIWVETEEYFRDLTLADIDFLFEFSRTSSLAFQDYFSIPLLGDVPTDNVVSSYRENEMEPAPKVNLGVSSEEEKKGDLVGSEDQKKGELVGSEDAKKVGEAVDSEDGLLVIEAIDDAAVEQPCPQDDRNQDSSGSSISLEWFLGCRNKLSLASERPTKKRRLLGVEAGLEKVIMTCPCDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHDGVDEAWLCSWCKQMGDVDESLNPCVLCPKKGGALKPVCSSVKGADSAAFVHLFCSLWMPEVYVDDLEKMEPVMNVGEVKETKKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNEFSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPDCRLSDHMLGCVAVPQQNVEVVERENENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKSHVYTSAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQPNCENPTSSNEASIPNATETKLLKSEDIFQEVQENADKPHKSCLSGYVSKDKCSIRLQNPSTLSYQQCLVHSASEPSDSGFIKGAVSSYIHPFINKKLLQIQDGVPLENVICSTDKGNSGLVESFGASGCSNSQNQNLTGSEISKPDEVKREQLVRTKEVELLEISPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPASDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPYIGVECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFRRGQIDAVEGMESVPKGVDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKHRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDMHDR 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02489 1469 SMART PHD_3 312 359 IPR001965 -
Viun9g02489 1469 SMART PHD_3 433 489 IPR001965 -
Viun9g02489 1469 SMART PHD_3 1187 1241 IPR001965 -
Viun9g02489 1469 SMART PHD_3 1066 1111 IPR001965 -
Viun9g02489 1469 ProSiteProfiles Extended PHD (ePHD) domain profile. 368 489 IPR034732 -
Viun9g02489 1469 PANTHER PHD FINGER PROTEINS 105 997 - -
Viun9g02489 1469 ProSiteProfiles Zinc finger PHD-type profile. 1064 1113 IPR019787 -
Viun9g02489 1469 SUPERFAMILY FYVE/PHD zinc finger 1058 1111 IPR011011 -
Viun9g02489 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 363 IPR013083 -
Viun9g02489 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1056 1116 IPR013083 -
Viun9g02489 1469 Pfam PHD-zinc-finger like domain 370 488 - -
Viun9g02489 1469 Pfam PHD-zinc-finger like domain 1133 1240 - -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 1319 1350 - -
Viun9g02489 1469 ProSiteProfiles Zinc finger PHD-type profile. 310 361 IPR019787 -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 101 119 - -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 543 557 - -
Viun9g02489 1469 Pfam PHD-finger 1078 1111 - -
Viun9g02489 1469 Pfam PHD-finger 326 359 - -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 531 557 - -
Viun9g02489 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 491 IPR013083 -
Viun9g02489 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1131 1242 IPR013083 -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 197 219 - -
Viun9g02489 1469 ProSiteProfiles Extended PHD (ePHD) domain profile. 1132 1241 IPR034732 -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 93 128 - -
Viun9g02489 1469 CDD ePHD 1135 1240 - -
Viun9g02489 1469 SUPERFAMILY FYVE/PHD zinc finger 302 359 IPR011011 -
Viun9g02489 1469 MobiDBLite consensus disorder prediction 1319 1349 - -
Viun9g02489 1469 Coils Coil 961 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02489 Viun-Chr9 34047110 34059649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02489 307 495 C2H2 Transcription Factor Family AT3G14740 29.688 2.22e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g02489 zf-HC5HC2H_2 4.8e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02489 - - vum:124846061 2641.3