Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02488 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGGACGATGTCTTCCGTTGAAGGACATGGCAGAGGAAGGGGATGCCGCTGCCGTGGGGAGACCCTGTCGGTCTGACTTTGTGGCGGAAATGACTTGTGATTCTTCTGTACGTGAAATTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTCTCAGAACGTTCCCCCTTTGATGCTGCTGAAGAAACTTCGACTTCTGCTGCGCTCACACTGCCCAGTGGGTTGGCTGGCCTGCTGAATAGGCAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGGCACAAGAGGAAATCGTCGACTAGGGCAAACCAGAAGAAGCCCGAGGATTCTAACATTTGGGTTGAGACTGAGGAGTACTTTAGAGACTTAACCTTGGCAGATATTGACTTCTTGTTTGAGTTCTCTCGCACTTCTAGTTTAGCTTTTCAGGACTATTTCTCCATTCCGCTGTTGGGAGATGTTCCGACAGACAATGTAGTTAGTAGTTATAGAGAGAATGAAATGGAGCCTGCTCCAAAAGTCAACCTAGGAGTGAGTAGTGAGGAAGAAAAAAAGGGTGATTTAGTGGGTAGTGAGGATCAAAAAAAGGGTGAATTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGATAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGCTGTTGAACAACCATGTCCTCAGGATGACAGGAATCAAGACAGTTCTGGTTCTTCTATCAGTTTAGAGTGGTTTTTGGGATGTAGGAATAAACTTTCTTTAGCTTCTGAGCGTCCCACCAAGAAAAGGAGGCTTTTGGGCGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAGCCGTTTTGCCATTATTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCGGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGTGTGCATGATGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCACTGAATCCTTGTGTTCTTTGTCCAAAGAAAGGTGGTGCATTAAAACCAGTTTGTAGCAGTGTGAAAGGTGCTGACTCAGCTGCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAAGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTTTCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTCTCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCAGATGGAGGATTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGTTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGAGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAACGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAAGCCATGTATATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATTTGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTGCACATGTGCAGAGTAGGACAGCCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACGGAAACGAAATTACTCAAGTCCGAGGATATTTTTCAAGAAGTTCAAGAGAATGCAGATAAACCTCACAAATCCTGCTTATCTGGGTACGTTTCAAAAGACAAGTGTAGTATTCGTTTGCAAAATCCTTCTACGCTTTCATATCAGCAATGTCTTGTTCATTCTGCTTCAGAACCATCTGATTCTGGTTTCATAAAGGGTGCTGTCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATCAGGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGCGGCTGCTCAAATAGCCAAAATCAGAACTTAACTGGCAGTGAAATATCAAAGCCTGATGAAGTAAAGAGGGAGCAATTGGTCAGGACTAAAGAAGTGGAACTTTTGGAAATTTCTCCACAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGACGGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCGGAGAAATATTCGGATTTCTGCATGCCAGCTTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCCATCTTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTACCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCCTCTAGAAGCTCTGGGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTGGTGTAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGACGGTCAATGGGTTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACTTTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTCTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAAAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCACCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCGCAGAGCAAATATAACCACAAGATCCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCCATGAAGAATTCAATGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGCATGACAGATAG 4413 0.4319 MLRFLCTLLLPAMTGGRCLPLKDMAEEGDAAAVGRPCRSDFVAEMTCDSSVREIEIDYLSQARKALSERSPFDAAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSTRANQKKPEDSNIWVETEEYFRDLTLADIDFLFEFSRTSSLAFQDYFSIPLLGDVPTDNVVSSYRENEMEPAPKVNLGVSSEEEKKGDLVGSEDQKKGELVGSEDAKKVGEAVDSEDGLLVIEAIDDAAVEQPCPQDDRNQDSSGSSISLEWFLGCRNKLSLASERPTKKRRLLGVEAGLEKVIMTCPCDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHDGVDEAWLCSWCKQMGDVDESLNPCVLCPKKGGALKPVCSSVKGADSAAFVHLFCSLWMPEVYVDDLEKMEPVMNVGEVKETKKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNEFSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPDCRLSDHMLGCVAVPQQNVEVVERENENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKSHVYTSAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQPNCENPTSSNEASIPNATETKLLKSEDIFQEVQENADKPHKSCLSGYVSKDKCSIRLQNPSTLSYQQCLVHSASEPSDSGFIKGAVSSYIHPFINKKLLQIQDGVPLENVISGSTDKGNSGLVESFGASGCSNSQNQNLTGSEISKPDEVKREQLVRTKEVELLEISPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPASDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPYIGVECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFRRGQIDAVEGMESVPKGVDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKHRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDMHDR 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02488 1470 MobiDBLite consensus disorder prediction 1320 1351 - -
Viun9g02488 1470 Pfam PHD-zinc-finger like domain 370 488 - -
Viun9g02488 1470 Pfam PHD-zinc-finger like domain 1134 1241 - -
Viun9g02488 1470 ProSiteProfiles Extended PHD (ePHD) domain profile. 1133 1242 IPR034732 -
Viun9g02488 1470 ProSiteProfiles Extended PHD (ePHD) domain profile. 368 489 IPR034732 -
Viun9g02488 1470 SUPERFAMILY FYVE/PHD zinc finger 302 359 IPR011011 -
Viun9g02488 1470 SMART PHD_3 312 359 IPR001965 -
Viun9g02488 1470 SMART PHD_3 433 489 IPR001965 -
Viun9g02488 1470 SMART PHD_3 1188 1242 IPR001965 -
Viun9g02488 1470 SMART PHD_3 1067 1112 IPR001965 -
Viun9g02488 1470 Coils Coil 962 982 - -
Viun9g02488 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1132 1243 IPR013083 -
Viun9g02488 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 491 IPR013083 -
Viun9g02488 1470 ProSiteProfiles Zinc finger PHD-type profile. 310 361 IPR019787 -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 101 119 - -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 543 557 - -
Viun9g02488 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 363 IPR013083 -
Viun9g02488 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1057 1117 IPR013083 -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 531 557 - -
Viun9g02488 1470 CDD ePHD 1136 1241 - -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 197 219 - -
Viun9g02488 1470 ProSiteProfiles Zinc finger PHD-type profile. 1065 1114 IPR019787 -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 1320 1350 - -
Viun9g02488 1470 SUPERFAMILY FYVE/PHD zinc finger 1059 1112 IPR011011 -
Viun9g02488 1470 MobiDBLite consensus disorder prediction 93 128 - -
Viun9g02488 1470 PANTHER PHD FINGER PROTEINS 105 998 - -
Viun9g02488 1470 Pfam PHD-finger 326 359 - -
Viun9g02488 1470 Pfam PHD-finger 1079 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02488 Viun-Chr9 34047109 34059649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02488 307 495 C2H2 Transcription Factor Family AT3G14740 29.688 1.90e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g02488 zf-HC5HC2H_2 4.8e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02488 - - vum:124846061 2650.16