Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02469 ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGTCCACTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGAAACCTATCTAACACTCCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAAGGTCTCACTCAACACCGTCGTCCCTTCCCAAAACCTAGACGTTCAGAAGAAAGTTCAATTTTCAGTTCACACGAATTCTACTGCGCAGGATGCTAAGGCCACCACTGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCGTCATCATCATCATTGCTTGGATGCAACCAGAAGGAGGATGTTCAGCAGGCTGGCTTTGACGCAAGTTTGAGATGTGATAGTGGAGTGAGTTCCCTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTTTGAGTCAGCCAGCTACCCAGTCTTCGGTTTTGGGACCTTCATTTGCTACAACCACCTCAGTTCATTCAGCTTCGGCACCTATGCTAAATTCAACAACACGATATTCTCATTCGCATCTAGATGGTGGCTCAAATCTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGTGGGGTTGTGAAATCAGAAAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGGGCAGAAGCTGAAGTGCAGGCTTCTTGTCTTGGTGTTGGTGATGCAGACTTGACGTCTAAAGAGAGCCATCGATCTACGGAGCAACAGGGGGGGGTTTTGAAAGAATCTGGCAATTCTAAATATACTTGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTATACAACCGCAGGCACTACTTCCCACATCCACAATCACATCTTCAGATGTGAAGTTGGAGTCTTCTAAGGTAGAAAAGCGAGAGAAGATTGCAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCAGACTGTAGGATATATGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATTGAGTATCTCAATAGGCTGAAGGGAAAGGATAATATCATACAACTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAAAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATAGAAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCTGACTTGAAGCCAGCCAACTTCCTTCTTGTCAAAGGATCCCTAAAATTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACGAACATCCAACGGGATTCACAGGTGGGTACACTAAGTTACATGTCTCCTGAGGCATTTATGTGTAATGAGACTGATGGCAATGGAAACATCATAAAGTGTGGCCGGTCATCAGATATCTGGTCCCTGGGTTGCATTCTTTATCAAATGGTATATGGGAGAACACCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCATTTCTTGTTCCTCCTATACCATCTCATCCATCTTTGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTCAACTGTGTAGTCAGCTCCAACAGCTTCTAAGTGATCCAGTTGACAAAACAACGTACTCACAAAATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATCTGTGTATTCAGCTGCATGAACGTTTGAAAAATACTGGAAACAAGTAG 2268 0.4365 MDGKPNPDSSSPDFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRNLSNTPSDPTNSQEQASSKVSLNTVVPSQNLDVQKKVQFSVHTNSTAQDAKATTELENLSSHMGSLGFAEMEWVEGNQIEASSSSSSLLGCNQKEDVQQAGFDASLRCDSGVSSLLPKRSVVTQDHLQQFSSFLSQPATQSSVLGPSFATTTSVHSASAPMLNSTTRYSHSHLDGGSNLTAEPFGEVNANPRPVTEGGVVKSENVFQKETNRMLVDRGAEAEVQASCLGVGDADLTSKESHRSTEQQGGVLKESGNSKYTWDDGKGKEAVDVATIQPQALLPTSTITSSDVKLESSKVEKREKIASSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDRSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDGNGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPIPSHPSLPQDNNSCKLLQHISETCTYDPEVSQLCSQLQQLLSDPVDKTTYSQNSRDQQLKLLSQMSDLCIQLHERLKNTGNK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02469 755 SUPERFAMILY Protein kinase-like (PK-like) 371 680 IPR011009 -
Viun9g02469 755 Gene3D Transferase(Phosphotransferase) domain 1 490 672 - -
Viun9g02469 755 Gene3D Phosphorylase Kinase; domain 1 370 457 - -
Viun9g02469 755 MobiDBLite consensus disorder prediction 28 67 - -
Viun9g02469 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Viun9g02469 755 SMART serkin_6 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02469 755 Pfam Protein kinase domain 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02469 755 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Viun9g02469 755 PANTHER MIXED LINEAGE PROTEIN KINASE 39 703 - -
Viun9g02469 755 FunFam serine/threonine-protein kinase mph1 isoform X1 491 673 - -
Viun9g02469 755 MobiDBLite consensus disorder prediction 24 67 - -
Viun9g02469 755 CDD PKc_Mps1 375 670 IPR027084 -
Viun9g02469 755 MobiDBLite consensus disorder prediction 280 306 - -
Viun9g02469 755 FunFam serine/threonine-protein kinase mph1 isoform X2 370 457 - -
Viun9g02469 755 ProSiteProfiles Protein kinase domain profile. 377 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02469 Viun-Chr9 33901463 33905004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02469 383 671 MAP Kinase Kinase Kinase AT4G08470 28.231 6.44e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Viun9g02469 Pkinase 1.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02469 K08866 - gmx:100788990 1235.71