Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02458 ATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATAACTCCCCAAGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGCCAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGTGCCATGGCCGTCGACGTCACCTCTGCTGTTAGATCTCGCCGTCCAGGCAGTTTTCGCGGCGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAAGCCGTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGTGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTCGCTAGGGATTGCTACCAGGGACAGGGTGGTGGTGGTGGTGGTGGTGGTGCAGGTGGTGATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGGGGTGGTGGTGGTGGTGGTGGCGGAGGAGGAGTGTGTTATAACTGTGGAGAGGAAGGGCATTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA 588 0.5935 MAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVRSRRPGSFRGGSGRGRGRYGGGESRGGGIGRRGAGGYGGGGGGPECYNCGRIGHFARDCYQGQGGGGGGGGAGGDGRIRRRGGGGGGGGGGGGGGGGGVCYNCGEEGHFARECPNVGKLNE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02458 195 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Viun9g02458 195 SUPERFAMILY Retrovirus zinc finger-like domains 155 192 IPR036875 GO:0003676|GO:0008270
Viun9g02458 195 FunFam Cold shock protein CspC 6 73 - -
Viun9g02458 195 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Viun9g02458 195 Pfam Zinc knuckle 173 189 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 MobiDBLite consensus disorder prediction 140 168 - -
Viun9g02458 195 SMART csp_8 8 73 IPR011129 GO:0003676
Viun9g02458 195 ProSiteProfiles Zinc finger CCHC-type profile. 174 189 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 Gene3D - 1 71 IPR012340 -
Viun9g02458 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 190 - -
Viun9g02458 195 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Viun9g02458 195 MobiDBLite consensus disorder prediction 77 107 - -
Viun9g02458 195 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Viun9g02458 195 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Viun9g02458 195 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Viun9g02458 195 Gene3D - 169 193 - -
Viun9g02458 195 Gene3D - 94 142 - -
Viun9g02458 195 SUPERFAMILY Retrovirus zinc finger-like domains 104 138 IPR036875 GO:0003676|GO:0008270
Viun9g02458 195 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Viun9g02458 195 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Viun9g02458 195 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02458 Viun-Chr9 33826932 33828054 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Viun9g02458 CSD 4.4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02458 - - gmx:100815773 202.986