Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02439 ATGTCGTTGAGTCCTCCCAGAGAGAGAAACAACGGCAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAATCGCATGGTCCGCGTCGCAGTGGATACCAACAACCCCTCAGACGTCACGTGTCCGCGATGCTTCGGACAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCATCGTCGATTTCACTACCCCAGACCCTTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGCTTCCCGGGTCTCCTTCAACCCGAACCCGAAGAGGTCCCCGTGCACCATCACCGCCGCCGTCGCTTACGCCGCCGCCAACCCGAACCCGAACCCGTCCCTGAACCCCCACACCCCCGCCCTCGCACGTGGATCGTATTCCAGCCCAATGACCAACCCAACCCCTTCCTGCCCATTAACAACATTCACAACCGCCCCGGCCCAGGCCCATTCCCATTCCCGCTCCCGCGCACCGTGGACACGCGCGACTATTTCTTGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCGCACCGGCGCCGGAGAGAGCCATCGACGCTATTCCGACGGTGAAAATTGCGAGCGCGCATCTTAAGGAGAATTCTAAGTGTCCAGTTTGTCAGGAGGAATTCGAGGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACATATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCTGTGTGCCGTCACGAGGTTCCTGTGCCGTCTTCTTCATCGGAGGAGGATGAGTGTATTGATGTGAGCGGAGATGAAGGTAGGTTGCGGAGGTGTTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCAAGGATATTTTGCATCTGA 948 0.5675 MSLSPPRERNNGNGRRRERPTFQMYWCFQCNRMVRVAVDTNNPSDVTCPRCFGQFICEVNVPRPRLIVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHRRRRLRRRQPEPEPVPEPPHPRPRTWIVFQPNDQPNPFLPINNIHNRPGPGPFPFPLPRTVDTRDYFLGPGLNELIEQITENDRQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSSSEEDECIDVSGDEGRLRRCLRWTRRFTSVWPFNSRIFCI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02439 315 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
Viun9g02439 315 SUPERFAMILY RING/U-box 206 273 - -
Viun9g02439 315 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Viun9g02439 315 SMART ring_2 226 266 IPR001841 -
Viun9g02439 315 MobiDBLite consensus disorder prediction 98 135 - -
Viun9g02439 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 273 IPR013083 -
Viun9g02439 315 FunFam E3 ubiquitin-protein ligase RING1-like 189 273 - -
Viun9g02439 315 Pfam Ring finger domain 225 267 IPR001841 -
Viun9g02439 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02439 Viun-Chr9 33650923 33653177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02439 198 312 C3H Transcription Factor Family AT1G68180 45.217 9.44e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02439 K11982 - gmx:100787399 389.037