Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02437 ATGTCGTTGAGTCCTCCCAGAGAGAGAAACAACGGCAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAATCGCATGGTCCGCGTCGCAGTGGATACCAACAACCCCTCAGACGTCACGTGTCCGCGATGCTTCGGACAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCATCGTCGATTTCACTACCCCAGACCCTTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGCTTCCCGGGTCTCCTTCAACCCGAACCCGAAGAGGTCCCCGTGCACCATCACCGCCGCCGTCGCTTACGCCGCCGCCAACCCGAACCCGAACCCGTCCCTGAACCCCCACACCCCCGCCCTCGCACGTGGATCGTATTCCAGCCCAATGACCAACCCAACCCCTTCCTGCCCATTAACAACATTCACAACCGCCCCGGCCCAGGCCCATTCCCATTCCCGCTCCCGCGCACCGTGGACACGCGCGACTATTTCTTGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCGCACCGGCGCCGGAGAGAGCCATCGACGCTATTCCGACGGTGAAAATTGCGAGCGCGCATCTTAAGGAGAATTCTAAGTGTCCAGTTTGTCAGGAGGAATTCGAGGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACATATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCTGTGTGCCGTCACGAGGTTCCTGTGCCGTCTTCTTCATCGGAGGAGGATGAGTGTATTGATGTGAGCGGAGATGAAGGTAGGTTGCGGAGGTGTTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGATATTTTGCATCTGACAGTCCTACACTCTCTGGCGCAGCTAGAAGGCAACCCTCTTGCTGCATTCTTTAA 1059 0.56 MSLSPPRERNNGNGRRRERPTFQMYWCFQCNRMVRVAVDTNNPSDVTCPRCFGQFICEVNVPRPRLIVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHRRRRLRRRQPEPEPVPEPPHPRPRTWIVFQPNDQPNPFLPINNIHNRPGPGPFPFPLPRTVDTRDYFLGPGLNELIEQITENDRQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSSSEEDECIDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGYFASDSPTLSGAARRQPSCCIL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02437 352 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Viun9g02437 352 FunFam E3 ubiquitin-protein ligase RING1-like 189 273 - -
Viun9g02437 352 SMART ring_2 226 266 IPR001841 -
Viun9g02437 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 150 271 - -
Viun9g02437 352 MobiDBLite consensus disorder prediction 98 135 - -
Viun9g02437 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 273 IPR013083 -
Viun9g02437 352 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
Viun9g02437 352 SUPERFAMILY RING/U-box 206 273 - -
Viun9g02437 352 Pfam Ring finger domain 225 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02437 Viun-Chr9 33650191 33653178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02437 198 316 C3H Transcription Factor Family AT1G68180 44.538 6.59e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02437 K11982 - gmx:100787399 399.823