Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02382 ATGTTCTTCCACTCAAATACCCCAGTCGCATTGATTTGTCATCAACCCACAGACTTCATTGGAACACCTTTTTCTCCTTCAATGGAAGGTGAAGAGGGAAAACAGTGCTCCCACAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTCGATTTTATTCTAGCATTGAGCATGCAGGAACAAGAGAGAGAGTTCACAATGCTTTCAACCATTGAAAGTGAAAGTGATGAATATCTGAGTGACTCCTCTATTGATAATGATGATGATGATGATCCTGACTTCGTAGAGAGTCAAGAGTTTGACTCTGATCTTCAGTTTCTTGAAGATGAGGAAAGCAATGATAACGATGATGATGAAGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGACGAGTTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGAGGATTATCCGCAAATGAAATCTCTACGTGCTTGAACCCATATACTTGCCAACGTGGTGAAAGAAAAAGTGGAATCGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGATGGTGAAGCAGTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACACTTAA 696 0.3994 MFFHSNTPVALICHQPTDFIGTPFSPSMEGEEGKQCSHKNPYVELEEVDFDFILALSMQEQEREFTMLSTIESESDEYLSDSSIDNDDDDDPDFVESQEFDSDLQFLEDEESNDNDDDEEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSANEISTCLNPYTCQRGERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNMASNT 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02382 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 231 IPR013083 -
Viun9g02382 231 FunFam E3 ubiquitin ligase BIG BROTHER-related 144 225 - -
Viun9g02382 231 Pfam Ring finger domain 177 218 IPR001841 -
Viun9g02382 231 MobiDBLite consensus disorder prediction 73 129 - -
Viun9g02382 231 SUPERFAMILY RING/U-box 177 225 - -
Viun9g02382 231 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 32 122 IPR043312 -
Viun9g02382 231 SMART ring_2 178 218 IPR001841 -
Viun9g02382 231 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Viun9g02382 231 MobiDBLite consensus disorder prediction 78 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02382 Viun-Chr9 33317449 33318310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02382 112 222 C3H Transcription Factor Family AT3G63530 49.123 2.03e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02382 K19045 - gmx:100526881 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02382 9 33317449 33318310 Viun8g01087 8 13390897 13391787 PCT