Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02354 ATGACCACACAGAACCGTCGTTCGTCGTTTTCCTCCTCAACGACGTCGTCTTTGGCCAAACGCCATGCATCCACCACCGCTTCTTCCTCTCTAGCGGCTCCTACAAATGTGCCGAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGTTCACCGCAACTCTTCCTCTTCGGTTCCGTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTCTGCCCTGTTCAGGCAATAAAAGGCCCACGCTTGCGAATGTCAAACCTACTAATGCAATTGTTTTCCCCAAGGCTAATTCTCTCGCTCTGAGGAATGAAGCTCCTCCGCCTCCTCCTCCACTCGTTGTCTCTGTTGCTGTTCCTCCTCCGGTGCTGGATGTTTCGCCTAGTAAATCAGATGCAATGTCGGTCTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGTCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGAAAGACGTTCAGCAATCTCAACATATCTGATTCTTCCGAATCAGGCAACATTTGTAGTAGGGACATACTTGTTGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTACGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCTAGCATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAAACTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAGTTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCTTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTGAGATTTGTACGTGCAGCTCAAGGAGTCGACGAGGTCCCTTCGCTGCAACTTGAGTGCTTGACAAACTATATTGCGGAATTGTCTCTCTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCCGCAATTTTTCTGGCAAAATTTATACTTTTCCCTTCAGTGAAACCATGGAACTCCACATTGCAGCATTACACGCTCTACCAGGCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTTGTAACAGCCTAAACTCAAATTTGCCAGCAATCAGAGAGAAATATAGCCAGCACAAGTACAAATATGTTGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1452 0.449 MTTQNRRSSFSSSTTSSLAKRHASTTASSSLAAPTNVPKKRPPLSNLTNTVVHRNSSSSVPCAAKLAKTKKEVVLPCSGNKRPTLANVKPTNAIVFPKANSLALRNEAPPPPPPLVVSVAVPPPVLDVSPSKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSSESGNICSRDILVELEKGDKFVNVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQKLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSVKPWNSTLQHYTLYQASDLCVCVKDLHRLCCNSLNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02354 483 SMART cyclin_7 258 342 IPR013763 -
Viun9g02354 483 SMART cyclin_7 358 442 IPR013763 -
Viun9g02354 483 FunFam Mitotic cyclin 6 236 336 - -
Viun9g02354 483 FunFam Cyclin A1 338 469 - -
Viun9g02354 483 CDD CYCLIN_AtCycA_like_rpt1 212 347 - -
Viun9g02354 483 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Viun9g02354 483 Pfam Cyclin, C-terminal domain 351 469 IPR004367 -
Viun9g02354 483 SUPERFAMILY Cyclin-like 351 475 IPR036915 -
Viun9g02354 483 CDD CYCLIN_AtCycA-like_rpt2 351 464 - -
Viun9g02354 483 SUPERFAMILY Cyclin-like 211 348 IPR036915 -
Viun9g02354 483 Pfam Cyclin, N-terminal domain 222 348 IPR006671 -
Viun9g02354 483 Gene3D - 236 349 - -
Viun9g02354 483 Gene3D - 222 469 - -
Viun9g02354 483 SMART Cyclin_C_2 351 473 IPR004367 -
Viun9g02354 483 PIRSF Cyclin_A_B_D_E 1 478 IPR046965 GO:0016538|GO:0044772
Viun9g02354 483 PANTHER CYCLINS 170 461 IPR039361 -
Viun9g02354 483 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02354 Viun-Chr9 33014297 33018010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02354 4 481 Core Cell Cycle Gene Families AT1G44110 62.190 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02354 K06627 - gmx:547781 822.002