Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02352 ATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTTCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTCGACGGATTCCTTAGGCTTATGGTCGTTGGACTTCTCTGGTCCACGTTCTCCGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACTCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGTTTCTCCAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAATATTTAAGGATCCAACACAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCAGCATACACAATTCCATTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATTGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 594 0.4175 MSLLRPSAIYNFVTSYPSLRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKFLQASYYIKNPSIHDIIIFKDPTQLYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIIGRYVTCYHRPTNI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02352 197 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Viun9g02352 197 ProSitePatterns Signal peptidases I signature 3. 159 172 IPR019758 GO:0004252|GO:0016020
Viun9g02352 197 Gene3D Umud Fragment, subunit A 59 194 - -
Viun9g02352 197 NCBIfam signal peptidase I 41 191 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02352 197 Pfam Signal peptidase, peptidase S26 39 189 IPR019533 GO:0004252|GO:0006465
Viun9g02352 197 PANTHER SIGNAL PEPTIDASE I 37 195 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02352 197 FunFam Peptidase/ serine-type peptidase 59 191 - -
Viun9g02352 197 CDD S26_SPase_I 53 186 IPR019533 GO:0004252|GO:0006465
Viun9g02352 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02352 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 154 173 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02352 197 PRINTS Bacterial leader peptidase 1 (S26A) family signature 110 122 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02352 197 SUPERFAMILY LexA/Signal peptidase 51 191 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02352 Viun-Chr9 33002105 33005062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02352 62 186 MADS-box Gene Family AT1G29960 28.800 1.25e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02352 K03100 - gmx:100306121 345.51